Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C20
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0059 - 394001-394708                                             31   1.2  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    31   1.6  
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938     30   2.9  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   2.9  
12_02_1174 - 26696869-26698191                                         29   5.0  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    28   8.7  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   8.7  

>08_01_0059 - 394001-394708
          Length = 235

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = +3

Query: 720 PPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
           PP      PP P          PP P      PP        PPPP      P
Sbjct: 3   PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPSHPLAPP 55


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +3

Query: 720  PPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPP 857
            PP      PP P          PP P      PP        PPPP
Sbjct: 1139 PPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPP 1184


>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
          Length = 331

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 398 FXFXFFXXFFFFXXFTYXILFFLNHNSYT*SF 303
           F F FF  FFFF  F +   FF +  S   S+
Sbjct: 64  FFFFFFFFFFFFFFFFFFFFFFFDRASCVSSY 95



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 398 FXFXFFXXFFFFXXFTYXILFF 333
           F F FF  FFFF  F +   FF
Sbjct: 62  FFFFFFFFFFFFFFFFFFFFFF 83



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 398 FXFXFFXXFFFFXXFTYXILFF 333
           F F FF  FFFF  F +   FF
Sbjct: 63  FFFFFFFFFFFFFFFFFFFFFF 84


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/86 (24%), Positives = 21/86 (24%)
 Frame = +3

Query: 633 PPXXXPXXXXXPXXXXXXXFXXPXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXX 812
           PP   P     P          P      PP      PP P          PP P     
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKG 375

Query: 813 XPPXXXXXXXXPPPPXXXXXXPXXXP 890
            PP        PPPP      P   P
Sbjct: 376 GPP--------PPPPKGGASRPPAAP 393


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/57 (26%), Positives = 15/57 (26%)
 Frame = +3

Query: 720 PPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXPXXXP 890
           PP      PP P          P  P      PP        PPPP      P   P
Sbjct: 116 PPALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKP 172


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = +3

Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPP 854
           P      PP      PP P          PP P      PP        PPP
Sbjct: 77  PQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPP 128


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 398 FXFXFFXXFFFFXXFTYXILFF 333
           F F FF  FFFF  F +   FF
Sbjct: 87  FFFFFFFFFFFFFFFFFFFFFF 108



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 392 FXFFXXFFFFXXFTYXILFFLNHNSY 315
           F FF  FFFF  F +   FF + + Y
Sbjct: 88  FFFFFFFFFFFFFFFFFFFFFSGDVY 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,302,859
Number of Sequences: 37544
Number of extensions: 248946
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)