Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_C20
(895 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 33 0.31
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.72
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 33.1 bits (72), Expect = 0.31
Identities = 17/64 (26%), Positives = 17/64 (26%)
Frame = +3
Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
P PP PP P PP P PP PPPP P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Query: 879 XXXP 890
P
Sbjct: 426 PPPP 429
Score = 31.5 bits (68), Expect = 0.95
Identities = 16/60 (26%), Positives = 16/60 (26%)
Frame = +3
Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
P PP PP P PP P PP PPPP P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +3
Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
P PP PP P P P PP PPPP P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Query: 879 XXXP 890
P
Sbjct: 425 PPPP 428
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +3
Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
P PP PP P PP P PP PPP P
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
Query: 879 XXXP 890
P
Sbjct: 427 PPPP 430
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/64 (25%), Positives = 16/64 (25%)
Frame = +3
Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
P PP PP P PP P PP PP P P
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPP 427
Query: 879 XXXP 890
P
Sbjct: 428 PPPP 431
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/73 (23%), Positives = 17/73 (23%)
Frame = +3
Query: 633 PPXXXPXXXXXPXXXXXXXFXXPXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXX 812
PP P P P PP PP P PP P
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPP 428
Query: 813 XPPXXXXXXXXPP 851
PP PP
Sbjct: 429 PPPPALRLACAPP 441
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/60 (25%), Positives = 15/60 (25%)
Frame = +3
Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
P PP P P PP P PP PPPP P
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPP 432
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.9 bits (69), Expect = 0.72
Identities = 20/86 (23%), Positives = 20/86 (23%)
Frame = +3
Query: 633 PPXXXPXXXXXPXXXXXXXFXXPXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXX 812
PP P P P PP PP P P P
Sbjct: 96 PPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPP 155
Query: 813 XPPXXXXXXXXPPPPXXXXXXPXXXP 890
PP PPPP P P
Sbjct: 156 YPPPLYPPPPNPPPPNAPYPPPPYPP 181
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/73 (23%), Positives = 17/73 (23%)
Frame = +3
Query: 636 PXXXPXXXXXPXXXXXXXFXXPXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXX 815
P P P P PP PP P PP P
Sbjct: 154 PPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPP 213
Query: 816 PPXXXXXXXXPPP 854
PP PPP
Sbjct: 214 PPNAPNPPYPPPP 226
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/86 (22%), Positives = 19/86 (22%)
Frame = +3
Query: 633 PPXXXPXXXXXPXXXXXXXFXXPXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXX 812
PP P P P PP PP P P P
Sbjct: 104 PPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPP 163
Query: 813 XPPXXXXXXXXPPPPXXXXXXPXXXP 890
P PPPP P P
Sbjct: 164 PPNPPPPNAPYPPPPYPPPPNPPYPP 189
>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 275 CIRNIQR-KCKNFKYNCYD-LEKIKSSR*XXXKKKXXKKKXXKK 400
C+ N QR K + K C D L K K + KKK KKK KK
Sbjct: 322 CLENHQRVKPRGAKKRCGDALPKKKKKKKKKKKKKKKKKKKKKK 365
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 8.9
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = +3
Query: 720 PPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXPXXXP 890
PP PP P PP P PP PPPP P P
Sbjct: 346 PPPPPTNNPPSP--PPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPP 400
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/64 (26%), Positives = 17/64 (26%)
Frame = +3
Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
P PP PP P PP P PP PPPP P
Sbjct: 350 PTNNPPSPPPPTNNTPPPPPPTNKPP---PPPPPTNGPPPPPPPTNGPPPPPPPTNGPPP 406
Query: 879 XXXP 890
P
Sbjct: 407 PPPP 410
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,135
Number of Sequences: 59808
Number of extensions: 241289
Number of successful extensions: 1169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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