Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C20
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    33   0.28 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    33   0.28 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    33   0.28 
AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical ...    31   0.84 
U21310-2|AAA62521.1|  322|Caenorhabditis elegans T box family pr...    30   1.9  
Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine...    28   7.8  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 17/64 (26%), Positives = 17/64 (26%)
 Frame = +3

Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
           P      PP      PP P          PP P      PP        PPPP      P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772

Query: 879 XXXP 890
              P
Sbjct: 773 PPPP 776


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 17/64 (26%), Positives = 17/64 (26%)
 Frame = +3

Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
           P      PP      PP P          PP P      PP        PPPP      P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772

Query: 879 XXXP 890
              P
Sbjct: 773 PPPP 776


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 17/64 (26%), Positives = 17/64 (26%)
 Frame = +3

Query: 699 PXXXXXXPPXXXXXXPPXPXXXXXXXXXXPPXPXXXXXXPPXXXXXXXXPPPPXXXXXXP 878
           P      PP      PP P          PP P      PP        PPPP      P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355

Query: 879 XXXP 890
              P
Sbjct: 356 PPPP 359


>AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical
           protein F52F10.1 protein.
          Length = 99

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 356 FTYXILFFLNHNSYT*SFYIFFGYYGCKIHQ 264
           F++  ++F NHNS +  F++ F    C+ HQ
Sbjct: 16  FSFSRIYFFNHNSVSFQFFLVFQKLTCRSHQ 46


>U21310-2|AAA62521.1|  322|Caenorhabditis elegans T box family
           protein 11 protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 121 LMHYSRLPNMYFKDIFIYHEGERFPYKFNLPSYDTQS 231
           L+H +R+P+  F  +  YH+GE    K N   Y T S
Sbjct: 147 LVHTARIPHSQFISVTAYHKGELNTLKTNNNPYSTGS 183


>Z93778-6|CAB07843.2|  554|Caenorhabditis elegans Hypothetical
           protein C31H5.3 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 270 SSVY*NLIFWNNIRLCVIRRKIEFVREPFTLVVNE-NILEIHVRKP*IMHQQRGD 109
           SS   N I  NNI  C   +K +F    F  ++NE  ++   VRK   MH  + D
Sbjct: 464 SSPQINPINNNNIYKCANNQKTQFEDRHFHHILNELRVISARVRKEEAMHALQAD 518


>AY523514-1|AAR98636.1|  554|Caenorhabditis elegans acetylcholine
           receptor (63.2 kD)(acr-19) protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 270 SSVY*NLIFWNNIRLCVIRRKIEFVREPFTLVVNE-NILEIHVRKP*IMHQQRGD 109
           SS   N I  NNI  C   +K +F    F  ++NE  ++   VRK   MH  + D
Sbjct: 464 SSPQINPINNNNIYKCANNQKTQFEDRHFHHILNELRVISARVRKEEAMHALQAD 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,056,035
Number of Sequences: 27780
Number of extensions: 207196
Number of successful extensions: 628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)