Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C18
         (892 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   1e-14
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  62   4e-10
SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87)                  29   3.8  
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 35/91 (38%), Positives = 62/91 (68%)
 Frame = +3

Query: 156 LNPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVXIMEKLNSL 335
           ++  ++ + K FV+ YY++FD  + R NL  +Y    S +TFEG Q+QG   I+ KL S+
Sbjct: 113 MSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PGSMLTFEGAQIQGTEAIVAKLVSM 169

Query: 336 TFQKITRIVTAVDSQPMFDGGVLINVLGRLK 428
            FQ++  ++T+ D+QP+ +GG+++ V+G+LK
Sbjct: 170 PFQQVLHVITSQDAQPLPNGGIIVFVMGQLK 200


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
 Frame = +3

Query: 162 PQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQ---LQGAVXIMEK 323
           P    +G+ FV+QYYTL +   +   L   Y   + F+      G Q   + G   I EK
Sbjct: 6   PSPQCVGREFVRQYYTLLNQ--EPLKLHRFYTKHSWFLHGRAENGPQENPIMGQEAIYEK 63

Query: 324 LNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD--SFY 497
           +  L F      +  VDS      GV++ V G L  +  P   +MQTFVL P  D   +Y
Sbjct: 64  IKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDIRKYY 123

Query: 498 VQHDIFR 518
           V +DIFR
Sbjct: 124 VHNDIFR 130


>SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 439 SSSHFNLPRTLIKTPPSNIGWESTAVTILVIF*KVKLFNFSI 314
           + + FN  R     PPSN+ W   AV + ++F  VK  N+ +
Sbjct: 21  NDNFFNQNRKKFGAPPSNLVWALYAVFVGILFSVVKFLNYRL 62


>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 196 NNITHCSMIRLNGQILLICTMLKLHS*PLREYNCRVLL 309
           N + H +M+  +G   L CT+++ H       NCR LL
Sbjct: 315 NGVLHTAMLNHDGGFELQCTLVRTHPNSSNIVNCRFLL 352


>SB_15686| Best HMM Match : DUF1168 (HMM E-Value=0.87)
          Length = 488

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = -3

Query: 275 HE*SFNIVHINKICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSR 96
           HE   ++VH    C +SR+  +C   + +   +C + R+  + + D  + H   K + SR
Sbjct: 364 HECDDHVVHDQPKCDMSRVYHECDDNVVQDQLECDMSRV--YHECDDHVVHDQLKCDMSR 421

Query: 95  KNSRCDE 75
               CD+
Sbjct: 422 VYHECDD 428


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 267 KFQHCTY*QDLPVEPDHRTMCNIVAQNL 184
           KF  C Y +++ VE DH+ +  IV + L
Sbjct: 418 KFDQCVYGREVTVESDHKPLAAIVTKPL 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,834,812
Number of Sequences: 59808
Number of extensions: 508040
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)