Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_C18
(892 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2), puta... 81 1e-15
At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2), puta... 80 2e-15
At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2), puta... 63 3e-10
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 60 3e-09
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 60 3e-09
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 50 2e-06
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 48 1e-05
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 46 4e-05
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 45 6e-05
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 44 2e-04
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 40 0.002
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 35 0.063
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 32 0.44
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 32 0.44
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 29 5.5
>At1g27310.1 68414.m03327 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 122
Score = 81.0 bits (191), Expect = 1e-15
Identities = 50/119 (42%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Frame = +3
Query: 171 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVXIMEKLNSLTFQKI 350
DA+ K FV+ YY+ FD A R LV++Y E S +TFEG ++QG+ I+ KL L FQ+
Sbjct: 4 DAVAKAFVEHYYSTFD--ANRPGLVSLYQ-EGSMLTFEGQKIQGSQNIVAKLTGLPFQQC 60
Query: 351 TRIVTAVDSQPMFD-GGVLINVLGRLK-CDEDPPHLYMQTFVLKPLGDSFYVQHDIFRL 521
+T VD QP GG+L+ V G L+ E + Q F L ++YV +DIFRL
Sbjct: 61 KHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLISNQGNYYVFNDIFRL 119
>At1g27970.1 68414.m03426 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 126
Score = 79.8 bits (188), Expect = 2e-15
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Frame = +3
Query: 171 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVXIMEKLNSLTFQKI 350
DA+ K FV+ YY+ FD R L +Y E S +TFEG ++QG I+ KL SL FQ+
Sbjct: 7 DAVSKAFVEHYYSTFD--TNRVGLAGLYQ-EASMLTFEGQKIQGVQSIVAKLTSLPFQQC 63
Query: 351 TRIVTAVDSQPMFD-GGVLINVLGRLK-CDEDPPHLYMQTFVLKPLGD-SFYVQHDIFRL 521
++ VD QP G+L+ V G L+ E+ + Q F L P SFYV +DIFRL
Sbjct: 64 KHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRL 123
>At1g11570.1 68414.m01328 nuclear transport factor 2 (NTF2),
putative similar to Swiss-Prot:P33331 nuclear transport
factor 2 (NTF-2) (Nuclear transport factor P10)
[Saccharomyces cerevisiae]
Length = 127
Score = 62.9 bits (146), Expect = 3e-10
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Frame = +3
Query: 171 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVXIMEKLNSLTFQKI 350
+ + FV YY LFD+ R++L ++YN TS +TFEG + G I KL L F +
Sbjct: 10 EEVASAFVNHYYHLFDN--DRSSLSSLYN-PTSLLTFEGQTIYGVDNISNKLKQLPFDQC 66
Query: 351 TRIVTAVDSQPMF----DGGVLINVLGRLKC-DEDPPHLYMQTFVL 473
+++ VDSQP GG+L+ V G ++ ED P + Q ++L
Sbjct: 67 HHLISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 59.7 bits (138), Expect = 3e-09
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Frame = +3
Query: 159 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVX-------IM 317
+P + +G+ FV+QYY + Q LV+ + ++SF+T V GAV I
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLTRPDVT--GAVTTVTTMQAIN 63
Query: 318 EKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY 497
+K+ SL ++ T + D+Q + GV++ V GRL +++ + Q+F L P ++
Sbjct: 64 DKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYF 123
Query: 498 VQHDIFR 518
V +D+FR
Sbjct: 124 VLNDVFR 130
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 59.7 bits (138), Expect = 3e-09
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Frame = +3
Query: 159 NPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVX-------IM 317
+P + +G+ FV+QYY + Q LV+ + ++SF+T V GAV I
Sbjct: 9 SPGAEVVGRAFVEQYYHILH---QSPGLVHRFYQDSSFLTRPDVT--GAVTTVTTMQAIN 63
Query: 318 EKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY 497
+K+ SL ++ T + D+Q + GV++ V GRL +++ + Q+F L P ++
Sbjct: 64 DKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQDKGYF 123
Query: 498 VQHDIFR 518
V +D+FR
Sbjct: 124 VLNDVFR 130
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 50.4 bits (115), Expect = 2e-06
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Frame = +3
Query: 171 DAIGKGFVQQYYTL-FDDPAQRANLVNMYNVETSFMTFEG-----VQLQGAVXIMEKLNS 332
+ IG FV++YY L + P+Q V+ + ++ S + G V ++ I E++ S
Sbjct: 13 NTIGNSFVEKYYNLLYKSPSQ----VHQFYLDDSVLGRPGSDGEMVSVKSLKAINEQIMS 68
Query: 333 LTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHD 509
++ I++I + DSQ + GV+ V G L E + Q+F L PL S++V +D
Sbjct: 69 FDYE-ISKIQILTADSQASYMNGVVTLVTGLLTVKEGQRMRFSQSFFLVPLNGSYFVLND 127
Query: 510 IFR 518
+FR
Sbjct: 128 VFR 130
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 47.6 bits (108), Expect = 1e-05
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Frame = +3
Query: 177 IGKGFVQQYYTLFDDPAQ----------RANLVNMYNVETSFMTFEGVQLQGAVXIMEKL 326
+G FV QYY +F + + R V V F TF+G+ E+L
Sbjct: 16 VGSAFVNQYYYIFCNMPEHLPRFYQEISRVGRVGQDGVMRDFSTFQGIS--------EEL 67
Query: 327 NSLTFQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQ 503
LT+ +T+ D+Q +GG L+ V G +E + QTF L P F+V
Sbjct: 68 KRLTYGDCNSAEITSYDTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQEKGFFVL 127
Query: 504 HDIFR 518
+DI R
Sbjct: 128 NDILR 132
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 45.6 bits (103), Expect = 4e-05
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Frame = +3
Query: 153 ALNPQYDAIGKGFVQQYYT-LFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVXIMEKLN 329
+++PQ+ +G GFVQ+YY L+D ++ V+ + +E S ++ G L G + ++ L
Sbjct: 9 SVDPQF--VGNGFVQEYYNHLYDSTSE----VHKFYLEDSMISRPG--LDGEIVTIKSLK 60
Query: 330 SLTFQ------KITRI-VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD 488
+ Q K +RI + DSQ GV+ V G + ++ + Q+F L
Sbjct: 61 GINDQIMSIDYKSSRIEILTADSQSTLKNGVVTLVTGLVIGNDGGRRKFSQSFFLVSRNG 120
Query: 489 SFYVQHDIFR 518
S++V +D FR
Sbjct: 121 SYFVLNDTFR 130
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 45.2 bits (102), Expect = 6e-05
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Frame = +3
Query: 162 PQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETS-FMTFEGVQLQGAVXIMEKLNSLT 338
P +G FV QYY + Q+ +L++ + E S + +G + A ++ N +
Sbjct: 6 PGATQVGSYFVGQYYQVLQ---QQPDLIHQFYSEPSRAIRIDGDSTETANSLLHIHNMVM 62
Query: 339 FQKITRI-VTAVDSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDSFYVQHDI 512
T I V ++S ++GGVL+ V G +K E ++QTF L P ++V D+
Sbjct: 63 SLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLSDV 122
Query: 513 F 515
F
Sbjct: 123 F 123
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +3
Query: 171 DAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVX--IMEKLNSLTFQ 344
D +G FV QYY + + + + G+ + I +K+ +L +
Sbjct: 17 DMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGYG 76
Query: 345 KITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 518
I+ + VD+Q GG ++ V G L + + QTF L P ++V +D+FR
Sbjct: 77 VISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRRTFSQTFFLAPQETGYFVLNDMFR 134
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 40.3 bits (90), Expect = 0.002
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Frame = +3
Query: 177 IGKGFVQQYYTLFDDPAQRANLVNMYNVETSFMTFEGVQLQGAVXIMEKLNSLTFQKITR 356
+G F +QYY + + N+Y + T L G + + L ++
Sbjct: 281 VGDEFARQYYNTLQNAPE-----NLYKLYKDKSTISRPGLDGTMRVFTLSKDLKWRSPGS 335
Query: 357 I----VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 518
+T+V SQ G+L+ V G L +E P + Q F L P + V D+FR
Sbjct: 336 FDSVKITSVTSQDSLKQGILVVVYGYLTFNERPARHFTQVFFLVPQEKGYIVCTDMFR 393
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.1 bits (77), Expect = 0.063
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 330 SLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDE-DPPHLYMQTFVLKPLGDSFYVQH 506
SL F I V ++S ++GGVL+ V G +K E ++QTF L P ++V
Sbjct: 4 SLNFTAIE--VKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVLS 61
Query: 507 DIF 515
D+F
Sbjct: 62 DVF 64
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 32.3 bits (70), Expect = 0.44
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Frame = +3
Query: 162 PQYDAIGKGFVQQYYTLFDD---PAQR----ANLVNMYNVETSFMTFEGVQLQGAVXIME 320
P I FV+QYY + A+R A++V+ +V + M+F V+ I +
Sbjct: 8 PSAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEA-----INK 62
Query: 321 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVL 473
+ S F+ V +VDSQ + G+ I V+G + ++ + Q F L
Sbjct: 63 HILSCDFENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKDNQRRKFSQMFYL 113
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 32.3 bits (70), Expect = 0.44
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Frame = +3
Query: 162 PQYDAIGKGFVQQYYTLFDD---PAQR----ANLVNMYNVETSFMTFEGVQLQGAVXIME 320
P I FV+QYY + A+R A++V+ +V + M+F V+ I +
Sbjct: 8 PSAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEA-----INK 62
Query: 321 KLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVL 473
+ S F+ V +VDSQ + G+ I V+G + ++ + Q F L
Sbjct: 63 HILSCDFENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKDNQRRKFSQMFYL 113
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 494 K*ISEWLQHEGLHVQMWRIFVTLQSSK 414
K +SEW +H G + WR V ++SSK
Sbjct: 529 KALSEWERHTGSKAKNWRTSVKVKSSK 555
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,534
Number of Sequences: 28952
Number of extensions: 343568
Number of successful extensions: 632
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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