Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_C17
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 152 3e-37
07_01_0578 + 4295386-4296489,4297394-4297507 147 1e-35
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.18
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 34 0.18
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.24
08_02_1278 - 25838146-25839411 32 0.54
03_05_0366 - 23505755-23506441 29 3.8
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 29 5.1
11_02_0096 - 8261667-8262083 29 6.7
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.7
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 152 bits (369), Expect = 3e-37
Identities = 78/135 (57%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Frame = +2
Query: 161 ARPLXSVXSAXRXPVQGCSQAPPXSCSRRPYVRTWSMMFTF-LCPRNSRQPYCVSKEAGH 337
ARPL SV + + R P +R + FT L N RQPY VS+ AGH
Sbjct: 5 ARPLVSVKALEGDMATDSAGIQMPQVLRAP-IRPDVVTFTHKLLSCNRRQPYAVSRRAGH 63
Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHRRVN+R
Sbjct: 64 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLR 123
Query: 518 ESGLGSSRCCYRRPS 562
+ S+ PS
Sbjct: 124 RIAVASALAATAVPS 138
Score = 92.3 bits (219), Expect = 5e-19
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Frame = +3
Query: 573 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 752
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRN
Sbjct: 142 ARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRN 201
Query: 753 RRRIQRKGP-S*SSTRIRGLTRAFRNIPGVEL 845
RR I RKGP T + +AFRN+PGV++
Sbjct: 202 RRYINRKGPLIVYGTEGSKVVKAFRNLPGVDV 233
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 147 bits (356), Expect = 1e-35
Identities = 64/89 (71%), Positives = 71/89 (79%)
Frame = +2
Query: 296 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 475
N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK
Sbjct: 51 NKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTK 110
Query: 476 PWRRWHRRVNLRTAESGLGSSRCCYRRPS 562
WR+WHRRVN+ + S+ PS
Sbjct: 111 TWRKWHRRVNVHLRRVAVASALAATSVPS 139
Score = 92.3 bits (219), Expect = 5e-19
Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = +3
Query: 573 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 752
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRN
Sbjct: 143 ARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRN 202
Query: 753 RRRIQRKGP-S*SSTRIRGLTRAFRNIPGVEL 845
RR I RKGP T + +AFRN+PGV++
Sbjct: 203 RRYINRKGPLIVYGTEGSKIVKAFRNLPGVDV 234
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +1
Query: 235 VFKAPIRPDLVNDVH--VSMSKKLEAALLREQG 327
VF+AP+RPD+V VH +S +K+ A+ R G
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAG 63
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 347 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 457
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 33.9 bits (74), Expect = 0.18
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +2
Query: 242 RRPYVRTWSMMFTFLCPRNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVR-GGGTHRS 418
+R +R W ++ ++ R C + G + WG R R R GGG
Sbjct: 110 QRRLIRRWGGLWRWIRRRGGAAAACEEEVEGRRR-IRRWGLRWLARRSSRGRSGGGVRGG 168
Query: 419 GQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTAESGLGSSRC 544
G+GA + GG A P HRR+ L + GSS C
Sbjct: 169 GRGAAADPAMGGA--ATAFPLALAHRRLFLLLLLAA-GSSSC 207
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.24
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 453 PPRHMLPKAP*PDLWVPPP 397
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -3
Query: 677 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 570
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_05_0366 - 23505755-23506441
Length = 228
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 308 PYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGA 430
P C S E + +AES TG A R R+ G T+ + + A
Sbjct: 134 PRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPTNDNDEEA 174
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +2
Query: 338 QTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRT 514
+ +A + T +A + R GG HR G+G G GG WRR V + T
Sbjct: 489 EAAATAAATAKATPPLARRTADGGAHR-GRGGGGAEADGGARRGRGGGWRRTATLV-VAT 546
Query: 515 AESGLGSSR 541
AE+G G R
Sbjct: 547 AEAGGGRQR 555
>11_02_0096 - 8261667-8262083
Length = 138
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = +2
Query: 278 TFLCPRNSRQPY-CVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 454
T L PR R P CV G + S T ++ R GGG G G+ GG
Sbjct: 45 TGLGPRRGRPPGGCVDGSLGQRRSPAIEVTSSSLKRKQLGGGGGQATGGDEVPGDRVTGG 104
Query: 455 RMFAPTKPWRRW 490
M + + W
Sbjct: 105 AMVSEERQGSAW 116
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 332 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 436
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,303,543
Number of Sequences: 37544
Number of extensions: 547325
Number of successful extensions: 1748
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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