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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C17
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               146   2e-35
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)                  31   1.7  
SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                30   2.9  
SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)                      30   2.9  
SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                30   2.9  
SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                30   2.9  
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_55070| Best HMM Match : OAR (HMM E-Value=0.92)                      30   2.9  
SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)         30   2.9  
SB_18| Best HMM Match : OAR (HMM E-Value=0.92)                         30   2.9  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   5.1  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             29   5.1  
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.1  
SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              29   6.8  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   9.0  
SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)                   28   9.0  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   9.0  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  146 bits (355), Expect = 2e-35
 Identities = 62/73 (84%), Positives = 68/73 (93%)
 Frame = +2

Query: 293 RNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 472
           +N RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT
Sbjct: 43  KNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 102

Query: 473 KPWRRWHRRVNLR 511
           K WR+WH +VN++
Sbjct: 103 KTWRKWHTKVNVQ 115



 Score =  103 bits (248), Expect = 1e-22
 Identities = 51/112 (45%), Positives = 69/112 (61%)
 Frame = +3

Query: 510 EQRRXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAW 689
           +QRR                 ARGH IEKI E+PLV++D ++ + KT  AV  L+ + A+
Sbjct: 115 QQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAY 174

Query: 690 SDILKVYKSQRLRAGKGKMRNRRRIQRKGPS*SSTRIRGLTRAFRNIPGVEL 845
            D+ K   S+++RAGKGKMRNRR + RKGP       +GL +AFRN+PGVEL
Sbjct: 175 EDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVEL 226



 Score = 37.5 bits (83), Expect = 0.015
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +1

Query: 175 VGVFSXARAGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSK 294
           + VF+     AG    P+  VFKAPIRPDLVN VH +++K
Sbjct: 6   ITVFNENGESAGQTTLPA--VFKAPIRPDLVNFVHSNIAK 43


>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
          Length = 532

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 193 ARAGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKKLEAA--LLREQGGWSPNQCRIMGYR 366
           ARA A    +    +++ P +  L+  +    ++  EAA  L+   G   P++  I+ +R
Sbjct: 187 ARAAAEVTHTQLAAIWEKPDKDSLLPILKYKSARITEAAAVLIVVNGTGVPDRL-IVSFR 245

Query: 367 TCCRPNSSCPWWW 405
            CCR N  C W+W
Sbjct: 246 GCCRVN--CNWYW 256


>SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 929

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = +2

Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
           + +A S+   R   ++ R         G+GA     R GR F   K  R+WH    L   
Sbjct: 692 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 750

Query: 518 ESGLGSSRCCY 550
           E  L   R CY
Sbjct: 751 EKVLVRHRTCY 761


>SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 806

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = +2

Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
           + +A S+   R   ++ R         G+GA     R GR F   K  R+WH    L   
Sbjct: 714 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 772

Query: 518 ESGLGSSRCCY 550
           E  L   R CY
Sbjct: 773 EKVLVRHRTCY 783


>SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 838

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = +2

Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
           + +A S+   R   ++ R         G+GA     R GR F   K  R+WH    L   
Sbjct: 601 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 659

Query: 518 ESGLGSSRCCY 550
           E  L   R CY
Sbjct: 660 EKVLVRHRTCY 670


>SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 929

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = +2

Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
           + +A S+   R   ++ R         G+GA     R GR F   K  R+WH    L   
Sbjct: 692 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 750

Query: 518 ESGLGSSRCCY 550
           E  L   R CY
Sbjct: 751 EKVLVRHRTCY 761


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
 Frame = +1

Query: 421 SGCLR*HVSWWTYVRPHEALAAL----APSRQPPNSGERPWQ------QPLLLPASQRSF 570
           SG +   V  + Y   +E   A+    A S QPP+S   PW+       PLLLPAS R  
Sbjct: 488 SGSIHREVHCFRYSSGNEVHCAVPLAGAVSTQPPSSSGLPWKVSSYDHWPLLLPASSRPL 547

Query: 571 RLE 579
            L+
Sbjct: 548 PLD 550


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 411 WVPPPRTRGIRATARPVPHD 352
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_55070| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 396

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = +2

Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
           + +A S+   R   ++ R         G+GA     R GR F   K  R+WH    L   
Sbjct: 159 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 217

Query: 518 ESGLGSSRCCY 550
           E  L   R CY
Sbjct: 218 EKVLVRHRTCY 228


>SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)
          Length = 414

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 217 PSPSRFVFKAPIRPDLVNDVHVSMSKKLEAALLREQ 324
           PS S  V+KAP  PD  N VH      ++A L RE+
Sbjct: 28  PSTSNAVYKAPFPPD-YNPVHDYFKTVIQALLKREE 62


>SB_18| Best HMM Match : OAR (HMM E-Value=0.92)
          Length = 213

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = +2

Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
           + +A S+   R   ++ R         G+GA     R GR F   K  R+WH    L   
Sbjct: 76  EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 134

Query: 518 ESGLGSSRCCY 550
           E  L   R CY
Sbjct: 135 EKVLVRHRTCY 145


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 341  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 457
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +2

Query: 299 SRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAPTK 475
           SRQPY   +  GH       G G      P +RGG   + G G   G    G R  AP  
Sbjct: 110 SRQPYGPGRGRGHPNGRPMQGRGMQ----PGIRGGMMPQQGPGVRPGFPPAGSRQMAPGM 165

Query: 476 PWRRWHRRVNLRTAESGLG 532
                H+++ ++    G+G
Sbjct: 166 RPGVPHQQMMMQQQAPGMG 184


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 157  RETHXATLAKRDLPKETLXAVRKTXRHATE--GVKKRXYVKXGPR 29
            RET    L   DLP E L   RKT   ++E  GV K    +  PR
Sbjct: 1163 RETRRTRLRSDDLPSENLGTRRKTESESSESDGVMKENKPQSRPR 1207


>SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = +2

Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
           + +A S+   R   ++ R         G+GA     R GR +   K  R+WH    L   
Sbjct: 478 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKYKEAKGIRKWHCVKTLPQQ 536

Query: 518 ESGLGSSRCCY 550
           E  L   R CY
Sbjct: 537 EKVLVRHRTCY 547


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/59 (33%), Positives = 23/59 (38%)
 Frame = +2

Query: 356 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTAESGLG 532
           WG G+    + R  GGG  R   G +G M  GG    P   W R       R    GLG
Sbjct: 24  WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGRMQGGGMGRGPGGGLG 81


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 359 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 487
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)
          Length = 824

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 463 RPHEALAALAPSR-QPPNSGERPWQQPLLLPA 555
           R   AL +  P + Q P S E+P  QP +LPA
Sbjct: 762 RNRSALVSATPKKPQAPTSEEKPTTQPAVLPA 793


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 241 KAPIRPDLVNDVHVSMSKKLEAALLREQGGWSPNQCRIMGYRTCC 375
           + P R   V + ++S +K L   ++   G W P QC+  GY   C
Sbjct: 729 RPPSRRCDVCNTYLSSTKALALHMMLCHGTWRPYQCQYCGYYFKC 773


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,992,627
Number of Sequences: 59808
Number of extensions: 558901
Number of successful extensions: 1342
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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