Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_C17
(904 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 146 2e-35
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 31 1.7
SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 2.9
SB_53232| Best HMM Match : OAR (HMM E-Value=0.92) 30 2.9
SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 2.9
SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 2.9
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_55070| Best HMM Match : OAR (HMM E-Value=0.92) 30 2.9
SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31) 30 2.9
SB_18| Best HMM Match : OAR (HMM E-Value=0.92) 30 2.9
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 5.1
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 29 5.1
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 29 6.8
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 9.0
SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16) 28 9.0
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.0
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 146 bits (355), Expect = 2e-35
Identities = 62/73 (84%), Positives = 68/73 (93%)
Frame = +2
Query: 293 RNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 472
+N RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT
Sbjct: 43 KNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 102
Query: 473 KPWRRWHRRVNLR 511
K WR+WH +VN++
Sbjct: 103 KTWRKWHTKVNVQ 115
Score = 103 bits (248), Expect = 1e-22
Identities = 51/112 (45%), Positives = 69/112 (61%)
Frame = +3
Query: 510 EQRRXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAW 689
+QRR ARGH IEKI E+PLV++D ++ + KT AV L+ + A+
Sbjct: 115 QQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAY 174
Query: 690 SDILKVYKSQRLRAGKGKMRNRRRIQRKGPS*SSTRIRGLTRAFRNIPGVEL 845
D+ K S+++RAGKGKMRNRR + RKGP +GL +AFRN+PGVEL
Sbjct: 175 EDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVEL 226
Score = 37.5 bits (83), Expect = 0.015
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +1
Query: 175 VGVFSXARAGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSK 294
+ VF+ AG P+ VFKAPIRPDLVN VH +++K
Sbjct: 6 ITVFNENGESAGQTTLPA--VFKAPIRPDLVNFVHSNIAK 43
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 193 ARAGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKKLEAA--LLREQGGWSPNQCRIMGYR 366
ARA A + +++ P + L+ + ++ EAA L+ G P++ I+ +R
Sbjct: 187 ARAAAEVTHTQLAAIWEKPDKDSLLPILKYKSARITEAAAVLIVVNGTGVPDRL-IVSFR 245
Query: 367 TCCRPNSSCPWWW 405
CCR N C W+W
Sbjct: 246 GCCRVN--CNWYW 256
>SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 929
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = +2
Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
+ +A S+ R ++ R G+GA R GR F K R+WH L
Sbjct: 692 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 750
Query: 518 ESGLGSSRCCY 550
E L R CY
Sbjct: 751 EKVLVRHRTCY 761
>SB_53232| Best HMM Match : OAR (HMM E-Value=0.92)
Length = 806
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = +2
Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
+ +A S+ R ++ R G+GA R GR F K R+WH L
Sbjct: 714 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 772
Query: 518 ESGLGSSRCCY 550
E L R CY
Sbjct: 773 EKVLVRHRTCY 783
>SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 838
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = +2
Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
+ +A S+ R ++ R G+GA R GR F K R+WH L
Sbjct: 601 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 659
Query: 518 ESGLGSSRCCY 550
E L R CY
Sbjct: 660 EKVLVRHRTCY 670
>SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
Length = 929
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = +2
Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
+ +A S+ R ++ R G+GA R GR F K R+WH L
Sbjct: 692 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 750
Query: 518 ESGLGSSRCCY 550
E L R CY
Sbjct: 751 EKVLVRHRTCY 761
>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 29.9 bits (64), Expect = 2.9
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Frame = +1
Query: 421 SGCLR*HVSWWTYVRPHEALAAL----APSRQPPNSGERPWQ------QPLLLPASQRSF 570
SG + V + Y +E A+ A S QPP+S PW+ PLLLPAS R
Sbjct: 488 SGSIHREVHCFRYSSGNEVHCAVPLAGAVSTQPPSSSGLPWKVSSYDHWPLLLPASSRPL 547
Query: 571 RLE 579
L+
Sbjct: 548 PLD 550
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 411 WVPPPRTRGIRATARPVPHD 352
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_55070| Best HMM Match : OAR (HMM E-Value=0.92)
Length = 396
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = +2
Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
+ +A S+ R ++ R G+GA R GR F K R+WH L
Sbjct: 159 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 217
Query: 518 ESGLGSSRCCY 550
E L R CY
Sbjct: 218 EKVLVRHRTCY 228
>SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31)
Length = 414
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 217 PSPSRFVFKAPIRPDLVNDVHVSMSKKLEAALLREQ 324
PS S V+KAP PD N VH ++A L RE+
Sbjct: 28 PSTSNAVYKAPFPPD-YNPVHDYFKTVIQALLKREE 62
>SB_18| Best HMM Match : OAR (HMM E-Value=0.92)
Length = 213
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = +2
Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
+ +A S+ R ++ R G+GA R GR F K R+WH L
Sbjct: 76 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 134
Query: 518 ESGLGSSRCCY 550
E L R CY
Sbjct: 135 EKVLVRHRTCY 145
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 341 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 457
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 29.1 bits (62), Expect = 5.1
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +2
Query: 299 SRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAPTK 475
SRQPY + GH G G P +RGG + G G G G R AP
Sbjct: 110 SRQPYGPGRGRGHPNGRPMQGRGMQ----PGIRGGMMPQQGPGVRPGFPPAGSRQMAPGM 165
Query: 476 PWRRWHRRVNLRTAESGLG 532
H+++ ++ G+G
Sbjct: 166 RPGVPHQQMMMQQQAPGMG 184
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 157 RETHXATLAKRDLPKETLXAVRKTXRHATE--GVKKRXYVKXGPR 29
RET L DLP E L RKT ++E GV K + PR
Sbjct: 1163 RETRRTRLRSDDLPSENLGTRRKTESESSESDGVMKENKPQSRPR 1207
>SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +2
Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517
+ +A S+ R ++ R G+GA R GR + K R+WH L
Sbjct: 478 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKYKEAKGIRKWHCVKTLPQQ 536
Query: 518 ESGLGSSRCCY 550
E L R CY
Sbjct: 537 EKVLVRHRTCY 547
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/59 (33%), Positives = 23/59 (38%)
Frame = +2
Query: 356 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTAESGLG 532
WG G+ + R GGG R G +G M GG P W R R GLG
Sbjct: 24 WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGRMQGGGMGRGPGGGLG 81
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 359 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 487
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)
Length = 824
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 463 RPHEALAALAPSR-QPPNSGERPWQQPLLLPA 555
R AL + P + Q P S E+P QP +LPA
Sbjct: 762 RNRSALVSATPKKPQAPTSEEKPTTQPAVLPA 793
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 241 KAPIRPDLVNDVHVSMSKKLEAALLREQGGWSPNQCRIMGYRTCC 375
+ P R V + ++S +K L ++ G W P QC+ GY C
Sbjct: 729 RPPSRRCDVCNTYLSSTKALALHMMLCHGTWRPYQCQYCGYYFKC 773
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,992,627
Number of Sequences: 59808
Number of extensions: 558901
Number of successful extensions: 1342
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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