BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP04_F_C17 (904 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 146 2e-35 SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 31 1.7 SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 2.9 SB_53232| Best HMM Match : OAR (HMM E-Value=0.92) 30 2.9 SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 2.9 SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) 30 2.9 SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9 SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9 SB_55070| Best HMM Match : OAR (HMM E-Value=0.92) 30 2.9 SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31) 30 2.9 SB_18| Best HMM Match : OAR (HMM E-Value=0.92) 30 2.9 SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 5.1 SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 29 5.1 SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8 SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 29 6.8 SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 9.0 SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16) 28 9.0 SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 9.0 >SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) Length = 299 Score = 146 bits (355), Expect = 2e-35 Identities = 62/73 (84%), Positives = 68/73 (93%) Frame = +2 Query: 293 RNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 472 +N RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT Sbjct: 43 KNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 102 Query: 473 KPWRRWHRRVNLR 511 K WR+WH +VN++ Sbjct: 103 KTWRKWHTKVNVQ 115 Score = 103 bits (248), Expect = 1e-22 Identities = 51/112 (45%), Positives = 69/112 (61%) Frame = +3 Query: 510 EQRRXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAW 689 +QRR ARGH IEKI E+PLV++D ++ + KT AV L+ + A+ Sbjct: 115 QQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAY 174 Query: 690 SDILKVYKSQRLRAGKGKMRNRRRIQRKGPS*SSTRIRGLTRAFRNIPGVEL 845 D+ K S+++RAGKGKMRNRR + RKGP +GL +AFRN+PGVEL Sbjct: 175 EDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVEL 226 Score = 37.5 bits (83), Expect = 0.015 Identities = 20/40 (50%), Positives = 26/40 (65%) Frame = +1 Query: 175 VGVFSXARAGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSK 294 + VF+ AG P+ VFKAPIRPDLVN VH +++K Sbjct: 6 ITVFNENGESAGQTTLPA--VFKAPIRPDLVNFVHSNIAK 43 >SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) Length = 532 Score = 30.7 bits (66), Expect = 1.7 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Frame = +1 Query: 193 ARAGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKKLEAA--LLREQGGWSPNQCRIMGYR 366 ARA A + +++ P + L+ + ++ EAA L+ G P++ I+ +R Sbjct: 187 ARAAAEVTHTQLAAIWEKPDKDSLLPILKYKSARITEAAAVLIVVNGTGVPDRL-IVSFR 245 Query: 367 TCCRPNSSCPWWW 405 CCR N C W+W Sbjct: 246 GCCRVN--CNWYW 256 >SB_55200| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) Length = 929 Score = 29.9 bits (64), Expect = 2.9 Identities = 21/71 (29%), Positives = 28/71 (39%) Frame = +2 Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517 + +A S+ R ++ R G+GA R GR F K R+WH L Sbjct: 692 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 750 Query: 518 ESGLGSSRCCY 550 E L R CY Sbjct: 751 EKVLVRHRTCY 761 >SB_53232| Best HMM Match : OAR (HMM E-Value=0.92) Length = 806 Score = 29.9 bits (64), Expect = 2.9 Identities = 21/71 (29%), Positives = 28/71 (39%) Frame = +2 Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517 + +A S+ R ++ R G+GA R GR F K R+WH L Sbjct: 714 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 772 Query: 518 ESGLGSSRCCY 550 E L R CY Sbjct: 773 EKVLVRHRTCY 783 >SB_49614| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) Length = 838 Score = 29.9 bits (64), Expect = 2.9 Identities = 21/71 (29%), Positives = 28/71 (39%) Frame = +2 Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517 + +A S+ R ++ R G+GA R GR F K R+WH L Sbjct: 601 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 659 Query: 518 ESGLGSSRCCY 550 E L R CY Sbjct: 660 EKVLVRHRTCY 670 >SB_40579| Best HMM Match : E-MAP-115 (HMM E-Value=0.85) Length = 929 Score = 29.9 bits (64), Expect = 2.9 Identities = 21/71 (29%), Positives = 28/71 (39%) Frame = +2 Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517 + +A S+ R ++ R G+GA R GR F K R+WH L Sbjct: 692 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 750 Query: 518 ESGLGSSRCCY 550 E L R CY Sbjct: 751 EKVLVRHRTCY 761 >SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 745 Score = 29.9 bits (64), Expect = 2.9 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 10/63 (15%) Frame = +1 Query: 421 SGCLR*HVSWWTYVRPHEALAAL----APSRQPPNSGERPWQ------QPLLLPASQRSF 570 SG + V + Y +E A+ A S QPP+S PW+ PLLLPAS R Sbjct: 488 SGSIHREVHCFRYSSGNEVHCAVPLAGAVSTQPPSSSGLPWKVSSYDHWPLLLPASSRPL 547 Query: 571 RLE 579 L+ Sbjct: 548 PLD 550 >SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 501 Score = 29.9 bits (64), Expect = 2.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 411 WVPPPRTRGIRATARPVPHD 352 W+PP RTR R T PV H+ Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247 >SB_55070| Best HMM Match : OAR (HMM E-Value=0.92) Length = 396 Score = 29.9 bits (64), Expect = 2.9 Identities = 21/71 (29%), Positives = 28/71 (39%) Frame = +2 Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517 + +A S+ R ++ R G+GA R GR F K R+WH L Sbjct: 159 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 217 Query: 518 ESGLGSSRCCY 550 E L R CY Sbjct: 218 EKVLVRHRTCY 228 >SB_24285| Best HMM Match : Glyco_transf_10 (HMM E-Value=6e-31) Length = 414 Score = 29.9 bits (64), Expect = 2.9 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +1 Query: 217 PSPSRFVFKAPIRPDLVNDVHVSMSKKLEAALLREQ 324 PS S V+KAP PD N VH ++A L RE+ Sbjct: 28 PSTSNAVYKAPFPPD-YNPVHDYFKTVIQALLKREE 62 >SB_18| Best HMM Match : OAR (HMM E-Value=0.92) Length = 213 Score = 29.9 bits (64), Expect = 2.9 Identities = 21/71 (29%), Positives = 28/71 (39%) Frame = +2 Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517 + +A S+ R ++ R G+GA R GR F K R+WH L Sbjct: 76 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKFKEAKGIRKWHCVKTLPQQ 134 Query: 518 ESGLGSSRCCY 550 E L R CY Sbjct: 135 EKVLVRHRTCY 145 >SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) Length = 1080 Score = 29.1 bits (62), Expect = 5.1 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +2 Query: 341 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 457 T +E +G ++ R PR RGGG G G G RGGR Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022 >SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) Length = 772 Score = 29.1 bits (62), Expect = 5.1 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Frame = +2 Query: 299 SRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAPTK 475 SRQPY + GH G G P +RGG + G G G G R AP Sbjct: 110 SRQPYGPGRGRGHPNGRPMQGRGMQ----PGIRGGMMPQQGPGVRPGFPPAGSRQMAPGM 165 Query: 476 PWRRWHRRVNLRTAESGLG 532 H+++ ++ G+G Sbjct: 166 RPGVPHQQMMMQQQAPGMG 184 >SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1396 Score = 29.1 bits (62), Expect = 5.1 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%) Frame = -1 Query: 157 RETHXATLAKRDLPKETLXAVRKTXRHATE--GVKKRXYVKXGPR 29 RET L DLP E L RKT ++E GV K + PR Sbjct: 1163 RETRRTRLRSDDLPSENLGTRRKTESESSESDGVMKENKPQSRPR 1207 >SB_26781| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 707 Score = 28.7 bits (61), Expect = 6.8 Identities = 20/71 (28%), Positives = 28/71 (39%) Frame = +2 Query: 338 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTA 517 + +A S+ R ++ R G+GA R GR + K R+WH L Sbjct: 478 EPAATSYAARRTATQLTRRVFFYVPAKGEGAVSRN-RDGRKYKEAKGIRKWHCVKTLPQQ 536 Query: 518 ESGLGSSRCCY 550 E L R CY Sbjct: 537 EKVLVRHRTCY 547 >SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) Length = 628 Score = 28.7 bits (61), Expect = 6.8 Identities = 20/59 (33%), Positives = 23/59 (38%) Frame = +2 Query: 356 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRRVNLRTAESGLG 532 WG G+ + R GGG R G +G M GG P W R R GLG Sbjct: 24 WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGRMQGGGMGRGPGGGLG 81 >SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) Length = 1098 Score = 28.3 bits (60), Expect = 9.0 Identities = 17/43 (39%), Positives = 19/43 (44%) Frame = +2 Query: 359 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 487 G GR + R P GGG R G +G M GG P W R Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310 >SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16) Length = 824 Score = 28.3 bits (60), Expect = 9.0 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +1 Query: 463 RPHEALAALAPSR-QPPNSGERPWQQPLLLPA 555 R AL + P + Q P S E+P QP +LPA Sbjct: 762 RNRSALVSATPKKPQAPTSEEKPTTQPAVLPA 793 >SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 4303 Score = 28.3 bits (60), Expect = 9.0 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = +1 Query: 241 KAPIRPDLVNDVHVSMSKKLEAALLREQGGWSPNQCRIMGYRTCC 375 + P R V + ++S +K L ++ G W P QC+ GY C Sbjct: 729 RPPSRRCDVCNTYLSSTKALALHMMLCHGTWRPYQCQYCGYYFKC 773 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 26,992,627 Number of Sequences: 59808 Number of extensions: 558901 Number of successful extensions: 1342 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1227 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1335 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2597949818 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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