Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C17
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   129   2e-30
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z79598-5|CAB01863.1|  367|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    28   7.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  129 bits (312), Expect = 2e-30
 Identities = 58/82 (70%), Positives = 65/82 (79%)
 Frame = +2

Query: 293 RNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPT 472
           RN RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP 
Sbjct: 45  RNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPL 104

Query: 473 KPWRRWHRRVNLRTAESGLGSS 538
           K +RRWHR VN+      + S+
Sbjct: 105 KVFRRWHRNVNIAQKRYAVSSA 126



 Score =  111 bits (268), Expect = 5e-25
 Identities = 52/93 (55%), Positives = 70/93 (75%)
 Frame = +3

Query: 570 QARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMR 749
           QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLRR   W+DI KVY S+R RAGKGK+R
Sbjct: 137 QARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLR 196

Query: 750 NRRRIQRKGPS*SSTRIRGLTRAFRNIPGVELL 848
           NR+  Q+ GP     +     RAFRNIPGV+++
Sbjct: 197 NRQHKQKLGPVVIYGQDAECARAFRNIPGVDVM 229


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +2

Query: 296 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 466
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 467 PTKP 478
             KP
Sbjct: 197 APKP 200


>Z79598-5|CAB01863.1|  367|Caenorhabditis elegans Hypothetical
           protein C44H4.6 protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 278 TFLCPRNSRQPYCVSKEAGHQTSAESWGTGRAVARI 385
           T++C R  R P  +     + TS ++W  G  V  +
Sbjct: 192 TYICSRYYRAPELIFGSKNYDTSIDTWSVGTVVGEL 227


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 361 YRTCCRPNSSCPWWWYP*VRSGC--LR*HVSWWTYVRPH 471
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 505 PPNSGERPWQQPLLLPASQRSFRLED 582
           P N+G+  W+  L LPA  R F+  D
Sbjct: 11  PANNGDENWKAGLNLPAKDRRFKTAD 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,095,308
Number of Sequences: 27780
Number of extensions: 384893
Number of successful extensions: 1021
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)