Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C17
         (904 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   8.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/60 (21%), Positives = 23/60 (38%)
 Frame = +1

Query: 151  SLGSPTFXVGVFSXARAGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKKLEAALLREQGG 330
            ++ +PT  V   S         P+ S  +    +  D++NDV   ++    A      GG
Sbjct: 838  TINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGG 897


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 419 GQGAFGNMCRGGRMFAP 469
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 15  PAAPYLGPXFTYXRFFTPSV 74
           P   Y+GP   + RF  P+V
Sbjct: 365 PRFRYIGPPTPFPRFIPPNV 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,005
Number of Sequences: 438
Number of extensions: 4706
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)