Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C17
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   146   1e-35
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   146   1e-35
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    28   7.4  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  146 bits (355), Expect = 1e-35
 Identities = 64/81 (79%), Positives = 70/81 (86%)
 Frame = +2

Query: 296 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 475
           NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK
Sbjct: 53  NSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 112

Query: 476 PWRRWHRRVNLRTAESGLGSS 538
            WRRWHRRVN+      + S+
Sbjct: 113 IWRRWHRRVNVNMKRHAIVSA 133



 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
 Frame = +3

Query: 573 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 752
           ARGH IE +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRN
Sbjct: 145 ARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRN 204

Query: 753 RRRIQRKGP-S*SSTRIRGLTRAFRNIPGVEL 845
           RR I RKGP     T    + +AFRN+PGVEL
Sbjct: 205 RRYISRKGPLVVFGTEGAKIVKAFRNLPGVEL 236



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 235 VFKAPIRPDLVNDVHVSMS 291
           V  AP+RPD+VN VH  +S
Sbjct: 33  VMTAPVRPDIVNFVHAQIS 51


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  146 bits (355), Expect = 1e-35
 Identities = 64/81 (79%), Positives = 70/81 (86%)
 Frame = +2

Query: 296 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 475
           NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK
Sbjct: 52  NSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 111

Query: 476 PWRRWHRRVNLRTAESGLGSS 538
            WRRWHRRVN+      + S+
Sbjct: 112 IWRRWHRRVNVNMKRHAIVSA 132



 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
 Frame = +3

Query: 573 ARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRN 752
           ARGH IE +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRN
Sbjct: 144 ARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRN 203

Query: 753 RRRIQRKGP-S*SSTRIRGLTRAFRNIPGVEL 845
           RR I RKGP     T    + +AFRN+PGVEL
Sbjct: 204 RRYISRKGPLVVYGTEGSKIVKAFRNLPGVEL 235



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 235 VFKAPIRPDLVNDVHVSMS 291
           V  AP+RPD+VN VH  +S
Sbjct: 32  VMTAPVRPDIVNFVHAQIS 50


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 655 CLVLLISWTLSATTKGSSGIFS 590
           CLVLL+S   +A TK  SGIF+
Sbjct: 9   CLVLLVSILRAAVTKPDSGIFT 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,539,686
Number of Sequences: 28952
Number of extensions: 376545
Number of successful extensions: 1025
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)