Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C16
         (914 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)             75   1e-13
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             64   2e-10
SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)                  31   1.7  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  29   6.9  

>SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)
          Length = 142

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 35/90 (38%), Positives = 57/90 (63%)
 Frame = +2

Query: 335 LEAEVSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFN 514
           L  +++VS +RA  +      ++      +RRLFLVEDL DS+K  V+L+ L+Y+   F+
Sbjct: 4   LSKDINVSKDRADLIGERAAGYIVDSTVSVRRLFLVEDLADSIKLLVVLYILSYLAQWFS 63

Query: 515 GITLIILGWIALFTLXKAYXMNXXQVDAXL 604
           GITL  +G+I LFT+ KAY M   ++++ +
Sbjct: 64  GITLTFIGFIGLFTVPKAYDMYREEINSAM 93


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 29/67 (43%), Positives = 43/67 (64%)
 Frame = +2

Query: 266 FRLYKNVLQAVQKTNDGHPFKXLLEAEVSVSAERAQALAXXXTAHLNAXLYELRRLFLVE 445
           +R+   V+ A+QK+   +PFK LL+ E+ +  E+A  +A     H+N     LRRLFLVE
Sbjct: 422 YRVGMTVMGAIQKSGTENPFKTLLDKEIEIPKEKAVEMAESLAEHINCLTKSLRRLFLVE 481

Query: 446 DLVDSLK 466
           D+VDS+K
Sbjct: 482 DIVDSIK 488


>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
          Length = 195

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 505 RPHVREAPQQHAELQRVHQVLHQEQS 428
           RPH+R A QQ + +Q+ H  LH++ +
Sbjct: 169 RPHIRLASQQWSAVQQFHDYLHEDDN 194


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 532 DDERDPVEARPHVREAPQQHAELQRVHQVLHQEQS 428
           DD  +  E R   R   ++H ++  VH  LH EQS
Sbjct: 151 DDGWEGKEVRKEARRQEEEHRKVTVVHSKLHPEQS 185


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 565 LRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 422
           ++Q++Q+Y  +   +   + R   ++  QQH + Q+  Q  HQ+Q  Q
Sbjct: 272 IQQQQQQYIQQQQVQHMQQQRLQQQQLLQQHLQRQQQQQRRHQQQQQQ 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,194,126
Number of Sequences: 59808
Number of extensions: 120818
Number of successful extensions: 355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)