Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C16
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.42 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   5.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -2

Query: 559 QREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 422
           Q   +  T+     P + + H  +A QQH +    H +  Q+Q +Q
Sbjct: 167 QMHHQMHTQHPHMQPQQGQ-HQSQAQQQHLQAHEQHMMYQQQQQSQ 211


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -2

Query: 577 HXVGLRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQS 428
           H    +QR++     + ER+  E    V    QQ  + Q+      Q+QS
Sbjct: 59  HSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQS 108



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 14/57 (24%), Positives = 19/57 (33%)
 Frame = -2

Query: 592 HLXXVHXVGLRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 422
           H    H    +  +QR   E       E R H      Q  + Q+  Q   Q+Q  Q
Sbjct: 51  HKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQ 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,625
Number of Sequences: 438
Number of extensions: 1281
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)