Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_C16
(914 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ... 46 5e-05
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ... 42 6e-04
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 42 8e-04
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ... 40 0.003
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta... 39 0.004
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 36 0.037
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak... 34 0.15
At3g10260.3 68416.m01230 reticulon family protein weak similarit... 34 0.15
At3g10260.2 68416.m01229 reticulon family protein weak similarit... 34 0.15
At3g10260.1 68416.m01228 reticulon family protein weak similarit... 34 0.15
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ... 33 0.26
>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 275
Score = 45.6 bits (103), Expect = 5e-05
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Frame = +2
Query: 344 EVSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGIT 523
EV + E LA +N LR + DL L LW L+ +G CFN +T
Sbjct: 156 EVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLT 215
Query: 524 LIILGWIALFTLXKAYXMNXXQVD-----AXLELXRAKIXXITXKVRAXVPXG 667
L + + LFT+ AY +VD A +EL + + + KV + +P G
Sbjct: 216 LAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIEL-KKQYAVLDEKVLSKIPLG 267
>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 255
Score = 41.9 bits (94), Expect = 6e-04
Identities = 27/88 (30%), Positives = 40/88 (45%)
Frame = +2
Query: 344 EVSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGIT 523
E+ V E +A LN LR + L DL L V LW ++ VG FN +T
Sbjct: 135 EIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLT 194
Query: 524 LIILGWIALFTLXKAYXMNXXQVDAXLE 607
L+ + ++ L T+ Y + +VD E
Sbjct: 195 LVYICFVILHTVPMLYEKHEDKVDPLAE 222
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 41.5 bits (93), Expect = 8e-04
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Frame = +2
Query: 344 EVSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGIT 523
EV + E LA +N + LR + D+ L LW L+ +G C++ +T
Sbjct: 152 EVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLT 211
Query: 524 LIILGWIALFTLXKAYXMNXXQVDAXLELXRAKI----XXITXKVRAXVPXG 667
L + + LFT+ Y +VD+ E A++ + KV + +P G
Sbjct: 212 LAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRG 263
>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251, SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 257
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +2
Query: 344 EVSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGIT 523
EV + + L +N L LR + +D+ + LW L+ +G+C+N +T
Sbjct: 135 EVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLT 194
Query: 524 LIILGWIALFTLXKAYXMNXXQVDA 598
L + LFT+ Y +VDA
Sbjct: 195 LFYTATVLLFTIPVLYEKYEDKVDA 219
>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
Pfam profile PF02453: Reticulon
Length = 253
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/88 (27%), Positives = 38/88 (43%)
Frame = +2
Query: 344 EVSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGIT 523
E+ + E + LN LR + L DL L LW ++ VG FN +T
Sbjct: 135 EIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLT 194
Query: 524 LIILGWIALFTLXKAYXMNXXQVDAXLE 607
L+ + ++ L T+ Y + +VD E
Sbjct: 195 LVYICFVVLHTVPMLYEKHEDKVDPVAE 222
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 35.9 bits (79), Expect = 0.037
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = +2
Query: 344 EVSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGIT 523
EV + + LA +N LR + DL L LW L+ VG+ N +T
Sbjct: 131 EVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLT 190
Query: 524 LIILGWIALFTLXKAYXMNXXQVD 595
LI + + LFT+ Y +VD
Sbjct: 191 LIYIATVLLFTIPVLYEKYEDKVD 214
>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311; identical to cDNA RTNLB11
GI:32331878
Length = 200
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/99 (19%), Positives = 40/99 (40%)
Frame = +2
Query: 347 VSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITL 526
+ + E A A +N L + + + + L+ ++LW ++YVG N +TL
Sbjct: 90 MEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTL 149
Query: 527 IILGWIALFTLXKAYXMNXXQVDAXLELXRAKIXXITXK 643
+ +G + + Y +D + + I+ K
Sbjct: 150 VYIGVLLSLSFPIVYEKYQDHIDEKVNSTSKFVRNISRK 188
>At3g10260.3 68416.m01230 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 267
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 401 LNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLXKAYXMN 580
+N L L+ L +L L + LW VG+C N +T++ +G++ T+ Y
Sbjct: 167 VNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERY 226
Query: 581 XXQVDAXLE 607
+VD ++
Sbjct: 227 EDEVDGFMD 235
>At3g10260.2 68416.m01229 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 401 LNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLXKAYXMN 580
+N L L+ L +L L + LW VG+C N +T++ +G++ T+ Y
Sbjct: 147 VNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERY 206
Query: 581 XXQVDAXLE 607
+VD ++
Sbjct: 207 EDEVDGFMD 215
>At3g10260.1 68416.m01228 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 401 LNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLXKAYXMN 580
+N L L+ L +L L + LW VG+C N +T++ +G++ T+ Y
Sbjct: 147 VNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERY 206
Query: 581 XXQVDAXLE 607
+VD ++
Sbjct: 207 EDEVDGFMD 215
>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311, SP|Q64548 Reticulon 1
(Neuroendocrine-specific protein) {Rattus norvegicus};
contains Pfam profile PF02453: Reticulon
Length = 201
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/88 (20%), Positives = 38/88 (43%)
Frame = +2
Query: 347 VSVSAERAQALAXXXTAHLNAXLYELRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITL 526
+ ++ E +A +N L R +++ + + V+LW +++VG N +T+
Sbjct: 82 LEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTI 141
Query: 527 IILGWIALFTLXKAYXMNXXQVDAXLEL 610
+ LG + + Y +D L L
Sbjct: 142 LYLGVVLSLLIPFLYERYQDLIDEKLSL 169
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,590,030
Number of Sequences: 28952
Number of extensions: 81244
Number of successful extensions: 306
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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