Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C13
         (863 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)                      28   8.5  
SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)                     28   8.5  

>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
          Length = 338

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 629 QQSHQRPEPFMLPLPAPTXHAADATGTNPRXPGQP 733
           Q  +Q P P+M+P P    HA      NPR PG P
Sbjct: 224 QPIYQLPYPYMVPYPYLYSHA-----YNPRYPGYP 253


>SB_4970| Best HMM Match : IBV_3C (HMM E-Value=2.2)
          Length = 1094

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 268 MFTIDXHGEGITAWKKKQTRKMRXCGSTGGRTACE 164
           + T +   +G+  W ++Q +    CG T G T  E
Sbjct: 336 LVTSEREVQGMKVWVRRQPKAAEQCGDTNGETELE 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,715
Number of Sequences: 59808
Number of extensions: 248778
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)