Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C13
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    33   0.35 
Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical...    29   5.7  
D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin ...    28   7.5  
AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical ...    28   9.9  

>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 226 KKKQTRKMRXCGSTGGRTACEAARGGT--TAXPXDCRKARKAXRVEGGGSR 80
           +K+Q+R  R  G  GGR      RGG    +   D RK R +   +GGG R
Sbjct: 129 QKRQSRGKRQGGGGGGRGGGGGGRGGDGGRSGEQDGRKKRNSGEQQGGGGR 179


>Z70306-4|CAH04694.1|  363|Caenorhabditis elegans Hypothetical
           protein C06G8.3b protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 593 KEKIAKAQLEREQQSHQRPEPFMLPLPAPTXHAADATGTNP 715
           KEK+ + QL  E  S   PE  M+P+ + T H+     T P
Sbjct: 134 KEKVTRVQLI-ENGSSSSPETLMIPIDSRTRHSLVVEETAP 173


>AL117202-18|CAB57896.3|  765|Caenorhabditis elegans Hypothetical
           protein Y47D3A.22 protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/30 (36%), Positives = 23/30 (76%)
 Frame = +2

Query: 548 RVEMDAEIQKKVAEFKEKIAKAQLEREQQS 637
           R ++ AE++K++A+   + AK ++ERE+Q+
Sbjct: 673 RQQVSAEVRKQIADDAAREAKIEVEREKQN 702


>D38632-1|BAA07612.1|  672|Caenorhabditis elegans OSM-3 (kinesin
           protein) protein.
          Length = 672

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -2

Query: 193 GSTGGRTACEAARGGTTAXPXDCRKARKAXRVEGGGSR---WKEA 68
           GSTGGR +C   R   T+   +  + +   R+ GGG     W++A
Sbjct: 399 GSTGGRWSCAPRR---TSFSIEEERKKNTGRIRGGGDERLAWRQA 440


>AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.9 protein.
          Length = 421

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 226 KKKQTRKMRXCGSTGGRT-ACEAARGGTTAXPXDCRKARKAXRVE 95
           KKK+ +K +  G +  +T + E  +GG  A P   R  R+  R E
Sbjct: 367 KKKKKKKSKKKGKSNNKTTSAEEQKGGKCAPPSRVRDERRETRDE 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,288,493
Number of Sequences: 27780
Number of extensions: 186463
Number of successful extensions: 677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)