Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C12
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1008 - 7987936-7988628,7988923-7989102                           36   0.056
07_01_1201 - 11419851-11419913,11420090-11420311                       31   1.6  
12_02_1188 + 26801833-26802225                                         29   3.7  
12_01_0816 + 7502669-7503145                                           29   4.9  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  

>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 35.5 bits (78), Expect = 0.056
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 709 RKRHASRREKGGQVSGKRQXRNRRAHEGAXQGETPG 602
           R R   RR  GG+V+G+   R+RR   GA +GE  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274


>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 526 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSXPAAYRIP 672
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R P
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQP 63


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 679 GGQVSGKRQXRNRRAHEGAXQGETPGIFIVLSG 581
           GG  SGKR      AHEG  +G  P +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVP-VYVVGEG 64


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 806 RRSGRAERGVRAHSPAWSERXTPN*DTYSVSYEKAPRFPKGERR 675
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 286 NESAN---ARGEAVCVLGALPLPRSLTRCAR 369
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,918,635
Number of Sequences: 37544
Number of extensions: 499062
Number of successful extensions: 1404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)