Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C12
         (877 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-842|AAF54310.1|  587|Drosophila melanogaster CG11966-PA...    30   4.8  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    29   8.4  
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    29   8.4  

>AE014297-842|AAF54310.1|  587|Drosophila melanogaster CG11966-PA
           protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -1

Query: 790 LNGGFVHTAQLGANDXH-RTEIPTA*AMRKRHASRREKGGQVSGKRQXRNRRAHEGAXQG 614
           L G + HT          RT  P A    KR  S++ K  Q   ++Q + ++  +G  Q 
Sbjct: 448 LLGNYPHTTTASTTGSEMRTGAPKA----KRSRSQK-KSNQQQQQQQQQQQQQGDGGGQP 502

Query: 613 ETPGIFIVL-SGFATSDLS 560
            TP +  +  SGF+ SDLS
Sbjct: 503 TTPQMSAISPSGFSASDLS 521


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 289 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 384
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 289 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 384
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,479,200
Number of Sequences: 53049
Number of extensions: 766320
Number of successful extensions: 2023
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2023
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)