Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C10
         (872 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19830.1 68416.m02512 C2 domain-containing protein low simila...    29   4.1  
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    29   4.1  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.4  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.4  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.1  
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    28   9.4  

>At3g19830.1 68416.m02512 C2 domain-containing protein low
           similarity to GLUT4 vesicle protein [Rattus norvegicus]
           GI:4193489; contains Pfam profile PF00168: C2 domain
          Length = 666

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 445 KRPGTVKRPRCWRFSIGSAPLDEHHKNRRSSQR 543
           K+P  V+R    +FS+G  PL   +  RR+S+R
Sbjct: 238 KKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRR 270


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 684 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGK 580
           A R RH+ R  +GG+ S  R  R R +  GA RG+
Sbjct: 575 APRGRHSDRAPRGGRFS-DRAPRGRHSDRGAPRGR 608


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 307  PLPRSLTRCARSFGCGERYQLTQRR 381
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 307  PLPRSLTRCARSFGCGERYQLTQRR 381
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 298 PIRKPPLPARWPIH*CRKNLPHL 230
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 445 KRPGTVKRPRCWRFSIGSAPLDEHHKNRRSSQR 543
           K+P  V+R    +FS+G  PL   +  R++S+R
Sbjct: 226 KKPDYVQRVEIKQFSLGDEPLSVRNVERKTSRR 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,967,886
Number of Sequences: 28952
Number of extensions: 316907
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)