Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C09
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    34   0.023
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    33   0.070
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    31   0.16 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.65 
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.65 
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   2.6  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.5  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 449 TSTTLTFASRTAAKDASTH-CARRPKSARASLTTSRTPAASA--SLHARLDVKMATAPVE 619
           T+T     S+     A  H  AR+P S     TT  TPA SA  S HAR   K A+AP  
Sbjct: 464 TTTASKRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSS 523

Query: 620 SASAGMAL 643
             +   A+
Sbjct: 524 PGTTSAAV 531


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 32.7 bits (71), Expect = 0.070
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +2

Query: 449 TSTTLTFASRTAAKDASTHCARRP-KSARASLTTSRTPAASASLHARLDVKMATAPVESA 625
           TS++L  +S T++  AS+        S+  + TTS TP +SA+  +      + +   S+
Sbjct: 135 TSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSS 194

Query: 626 SAGMALNXTTDVNTVCQLAVTTA 694
            A  +LN TT          +TA
Sbjct: 195 LASSSLNSTTSATATSSSLSSTA 217


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
 Frame = +1

Query: 457 NPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGFCIATCPIGCQNGHCSGRECVCRD 636
           NP  C+    K    +LC   +   C+  H KNAG  C  +     +   C+G    C  
Sbjct: 338 NP-CCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLCRQSTNPCDKPEFCTGISSKCPV 396

Query: 637 GFKLXYGRKYCVPACSNNCAGVGNCTSPNR-CDCAPGY--XTTHDGSC 771
                 GR  C  +        G CTS +R C     +   + H  SC
Sbjct: 397 DENWDDGR-ICQDSLGMGSCASGVCTSASRQCKKLTNFSSLSCHSDSC 443


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = +2

Query: 449 TSTTLTFASRTAAKDASTHCARRPKSARASLTT--SRTPAASASLHARLDVKMATAPVES 622
           TS+T +  S +++  +S+  + RP S+ + +TT  S T  ++ ++         ++ V S
Sbjct: 211 TSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPS 270

Query: 623 ASAGMALNXTTDVN 664
           ++A +ALN +   N
Sbjct: 271 STAALALNASKASN 284


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 11/147 (7%)
 Frame = +2

Query: 326 EYVISKYLQLNLSRIRGRYLKETDPGPISASFVLAAMAT*GTSTTLTFASRTAAKDASTH 505
           E + ++  Q N+  + G     +     S+S V +  ++  ++T  T +S +++  +S+ 
Sbjct: 99  EQIYAQSQQFNI--VEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSS 156

Query: 506 CARRPKSARA---SLTTSRTPAASASLHARLDVKMATAP--------VESASAGMALNXT 652
            + +  S+ +   S ++SRT +   + H     +    P        + +A+ G   N T
Sbjct: 157 SSSKSSSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYNITNATNGTYCNGT 216

Query: 653 TDVNTVCQLAVTTAPVSVIALHQTDAT 733
              N  C +  + A  S   L+ T++T
Sbjct: 217 NGTNFTCIVNASNATNSTFWLNGTNST 243


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 673 PACSNNCAGVGNCTSPNRCDCAPGY 747
           P+    C     C SPN  +C PGY
Sbjct: 365 PSLCRTCPPNAICPSPNYVECKPGY 389


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 436 GYVRNIYNPNICEPHCSKGCVNALCTAPEICTCFPDHVKNAGGF 567
           G   NI+  N   P  ++  + +L TA     CFP   KN G F
Sbjct: 85  GMAGNIFARNRIAP--ARWLITSLSTAATFMFCFPKTSKNIGAF 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,934
Number of Sequences: 5004
Number of extensions: 66564
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)