Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C08
         (943 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.19 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.5 bits (58), Expect = 0.19
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 632 TPPXPXPXPPPP 667
           TPP P P PPPP
Sbjct: 337 TPPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 805 PPPPXPPPXXPXXPXP 852
           PP P PPP  P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 780 PXPTPXPXPPXTPXP 824
           P P P P PP +  P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +2

Query: 533 PPXXPXPXXRPTXPPPXXXXXXSXXPXXXTPPPTPPXPXP 652
           P   P P   P  P        S  P    PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/27 (33%), Positives = 10/27 (37%)
 Frame = +2

Query: 608 PXXXTPPPTPPXPXPXPPPPXXPHXTP 688
           P   +PP     P P  PP   P   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 11/40 (27%), Positives = 11/40 (27%)
 Frame = +2

Query: 545 PXPXXRPTXPPPXXXXXXSXXPXXXTPPPTPPXPXPXPPP 664
           P P   P   P          P    PP  PP   P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/28 (32%), Positives = 9/28 (32%)
 Frame = +3

Query: 768 PXPSPXPTPXPXPPXTPXPPXXPXAXXP 851
           P P P P   P  P    PP       P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 805  PPPPXPPP 828
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 666  GGGGXGXGXGGVGG 625
            GGGG   G GG+GG
Sbjct: 1705 GGGGSLAGLGGLGG 1718


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 666  GGGGXGXGXGGVGG 625
            GGGG   G GG+GG
Sbjct: 1701 GGGGSLAGLGGLGG 1714


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,857
Number of Sequences: 438
Number of extensions: 6817
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)