Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_C07
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0631 - 4752606-4752706,4754039-4755578 35 0.075
04_03_0235 - 13111282-13111878 31 1.6
11_07_0001 + 27168579-27168783,27169415-27169629 30 2.8
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 30 2.8
09_02_0280 - 6705110-6705324,6705956-6706160 30 2.8
02_05_0764 + 31589040-31589309,31589322-31589529,31589892-31590193 29 4.9
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 29 6.5
10_08_0399 - 17614585-17614809,17614860-17615168 28 8.6
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 28 8.6
05_02_0156 + 7163756-7163834,7165447-7166225 28 8.6
01_04_0056 + 15476868-15476896,15477581-15478259 28 8.6
>01_01_0631 - 4752606-4752706,4754039-4755578
Length = 546
Score = 35.1 bits (77), Expect = 0.075
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 365 QSLPGLAPLLHQYRFVELEQSGGLSSRYGACAAWTWHGXARARPDKT 225
Q+ L H +FV + Q GG SSR + W+WH R D T
Sbjct: 333 QASRSLCATHHGIKFVNVNQHGGSSSRSFSITLWSWHEDQTWREDAT 379
>04_03_0235 - 13111282-13111878
Length = 198
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 242 HARXRATSKPHT-HRNGSKGLRIVPAQRTGTGAAKAPVRAKTATLSAPTS 388
H R S+PH+ HR GS+ V + T T AA V A T++A S
Sbjct: 26 HRRRFLASRPHSSHRLGSRLTVAVDSSPTATPAAAPTVTALAVTIAAAAS 75
>11_07_0001 + 27168579-27168783,27169415-27169629
Length = 139
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 331 WCSKGASPGKDC-NVKCSDLLTERHY*GSEM 420
WC+ G++ G C NV+ LL E HY GS +
Sbjct: 51 WCAAGSATGGLCVNVRLDVLLLEVHYEGSSV 81
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -3
Query: 273 CGLDVA---RXRACATRQDPGPQESXCESPXXRSAGTRPQTRERXGGKNPTQXTTKSEKX 103
CG D A R +A DP +ES RSA P+ R R G+ + TK ++
Sbjct: 96 CGDDRALPRRRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPPTKRKEV 155
Query: 102 G 100
G
Sbjct: 156 G 156
>09_02_0280 - 6705110-6705324,6705956-6706160
Length = 139
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 331 WCSKGASPGKDC-NVKCSDLLTERHY*GSEM 420
WC+ G++ G C NV+ LL E HY GS +
Sbjct: 51 WCAAGSATGGLCVNVRLDVLLLEVHYEGSSV 81
>02_05_0764 + 31589040-31589309,31589322-31589529,31589892-31590193
Length = 259
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +2
Query: 179 ALRXXGLSQXLSCGPGSCLVAHA----RXRATSKPHT 277
A++ L Q +SCGPG L+ H RATS HT
Sbjct: 11 AVQRAALQQAVSCGPGFGLLQHTTPAQNHRATSTVHT 47
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -2
Query: 235 QTRPRAAGEXLRKPXXPQRRHETADAGTXWRQEPNAEXNQKRKXRKRXQXEXSG 74
++R R++G RK RRH + R + + + +R+ R+R + E G
Sbjct: 54 RSRSRSSGSKRRKASSSSRRHRHHHHKSSGRSRRSRDDDDERRRRRRRRDEERG 107
>10_08_0399 - 17614585-17614809,17614860-17615168
Length = 177
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = -3
Query: 183 SAGTRP-QTRERXGGKNPTQXTTKSEKXGNGGXAXGAGXGPETXG 52
SA + P + R GG PT S K G G G G G G
Sbjct: 45 SASSSPVEAYLRGGGAPPTHVAVASSKGGKGKRGGGGGAGAREGG 89
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 272 HTHRNGSKGLRIVPAQRTGTGAAKAPVRAKTATLSAPTS 388
H H S G VP T +AKA VR+++A P +
Sbjct: 422 HRHHASSGGAAAVPNYMAATESAKARVRSQSAPRQRPAT 460
>05_02_0156 + 7163756-7163834,7165447-7166225
Length = 285
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +3
Query: 240 RTRAAVPRPSRTRTVTARKASG 305
R RAA PRP R R V RKA G
Sbjct: 101 RRRAAPPRPRRLRPVGHRKAPG 122
>01_04_0056 + 15476868-15476896,15477581-15478259
Length = 235
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 227 SCLVAHARXRATSKPHTHRNGSKGLRIVPAQRTGTGAAKAPVRAKTATLSAP 382
+CL++ AR A + PH+H + PA T T A P T AP
Sbjct: 54 NCLISLARPAAPTLPHSHLTNPRH----PATPTATAATPKPNTPPDPTRPAP 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,364,857
Number of Sequences: 37544
Number of extensions: 321040
Number of successful extensions: 1113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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