Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C07
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               29   5.0  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  29   5.0  
SB_34725| Best HMM Match : CTP_transf_2 (HMM E-Value=8.2)              29   6.6  
SB_18598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 383 SEHLTLQSLPGLAPLLHQYRFVELEQSGG 297
           + HL ++++  LA  L Q++F+E+E+  G
Sbjct: 484 TNHLDMETIEALAKALRQFKFIEMEKKEG 512


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = -3

Query: 237 TRQDPGPQESXCESPXXRSAGTRPQTRERXGGKNPTQXTTKSEKXGNGGXAXGAGXGPET 58
           T++   PQE+   S   +SAG+ P        + P Q   + E  G  G     G   E 
Sbjct: 199 TKEGNSPQENSKTSGQGQSAGSVPSLTSTGSERKPEQQENQQES-GKSGKQPTEGDAREQ 257

Query: 57  XGAQX*KKAPS 25
             +Q   K P+
Sbjct: 258 SPSQSGSKQPN 268


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = -3

Query: 237 TRQDPGPQESXCESPXXRSAGTRPQTRERXGGKNPTQXTTKSEKXGNGGXAXGAGXGPET 58
           T++   PQE+   S   +SAG+ P        + P Q   + E  G  G     G   E 
Sbjct: 477 TKEGNSPQENSKTSGQGQSAGSVPSLTSTGSERKPEQQENQQES-GKSGKQPTEGDAREQ 535

Query: 57  XGAQX*KKAPS 25
             +Q   K P+
Sbjct: 536 SPSQSGSKQPN 546


>SB_34725| Best HMM Match : CTP_transf_2 (HMM E-Value=8.2)
          Length = 172

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +3

Query: 219 ALGLVWSRTRAAVPRPSRTRTVTARKASGL 308
           AL L W RT A+VPR  R RT TA + + L
Sbjct: 127 ALSLYWGRTPASVPR-LRLRTPTALRRARL 155


>SB_18598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +3

Query: 441 VTASMP--GTVGRTTARAPYLILAAAKFHCELQGRLSIRSPRNRTV 572
           VT  +P  GTVGR+    P+ ++  A   C     L + +P N  V
Sbjct: 330 VTIFLPILGTVGRSIGTHPWYLMIPATISCSFAFMLPVATPPNAIV 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,842,892
Number of Sequences: 59808
Number of extensions: 328674
Number of successful extensions: 923
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)