Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C07
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34650.1 68417.m04920 farnesyl-diphosphate farnesyltransferas...    29   4.1  
At4g18190.1 68417.m02703 purine permease family protein similar ...    28   7.2  
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote...    28   9.5  
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil...    28   9.5  

>At4g34650.1 68417.m04920 farnesyl-diphosphate farnesyltransferase 2
           / squalene synthase 2 (SQS2) nearly identical to
           GI:2228795; synonomous with farnesyl-diphosphate
           farnesyltransferase, FPP:FPP farnesyltransferase, and
           squalene synthetase
          Length = 378

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -2

Query: 358 CPDWRLCCTSTGSLSWNNPEAFRAVTVRVRLGRGTAARVRDQTR 227
           C   ++    T +L +NN + FR V   VRL RG  A+V D+T+
Sbjct: 288 CAIPQIVAIGTLALCYNNVQVFRGV---VRLRRGLIAKVIDRTK 328


>At4g18190.1 68417.m02703 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 358

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 234 WSRTRAAVPRPSRTRTVTARKASGLFQLN 320
           W  T   +P PS+T+T+T +  S    L+
Sbjct: 53  WLETLVQLPEPSKTKTITKKTTSSFLTLS 81


>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
           contains Pfam domain PF03194: LUC7 N_terminus
          Length = 402

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 514 NSTVNFRVDFRFDLLETELCA*CGXFLNVPDSNKSL 621
           +ST    VD R    +  LC  CG FL+V DS++ L
Sbjct: 251 DSTKYTAVDVRITDQKLRLCDICGAFLSVYDSDRRL 286


>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 427

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -3

Query: 177 GTRPQTRERXGGKNPTQX-TTKSEKXGNGGXAXGAGXGPETXGAQX*KKAPSRXGRRK 7
           G++P  + + GG N TQ  +  S K  NG        G    G +  K+  SR  R+K
Sbjct: 366 GSKPSGKTK-GGSNKTQNGSADSSKTENGSADDSKTNGSAEDGEKEFKQVKSRRNRKK 422


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,491
Number of Sequences: 28952
Number of extensions: 218819
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)