Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C06
         (862 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24057| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.69 
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                29   3.7  

>SB_24057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 407 DWISIMIFNFKYNLKLXSAKVFLVIN 484
           DW+S M+   K N KL +AKVF V++
Sbjct: 94  DWVSSMVVAVKRNAKLTNAKVFTVVD 119


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 844 APNTQXPXPXRWRIHXAGKTSHPSPGTXNIK 752
           APN   P P ++       TS P+PGT N++
Sbjct: 213 APNMMSPSPQQFIAQSPAPTSVPTPGTLNVQ 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,474,173
Number of Sequences: 59808
Number of extensions: 377463
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)