Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C05
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...    31   1.3  
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...    31   1.3  
02_02_0240 + 8196140-8198248,8198381-8198650                           28   8.9  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +1

Query: 298 MNRPTRGE--RRFAYWALFRFLASLTRCARSFGCGERYXLTQRR*YGYPQNQGITQERXC 471
           + RPTR +  RR  Y A   ++    R  R    G +  + +   YG P++QGITQ +  
Sbjct: 144 LTRPTRPDKARRLGYKAKQGYVVYRVRVRRG---GRKRPVPKGIVYGKPKHQGITQLKFQ 200

Query: 472 EPKXS---QRAGTRKKGAL 519
             K S   +RAG RK G L
Sbjct: 201 RNKRSVAEERAG-RKLGGL 218


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +1

Query: 298 MNRPTRGE--RRFAYWALFRFLASLTRCARSFGCGERYXLTQRR*YGYPQNQGITQERXC 471
           + RPTR +  RR  Y A   ++    R  R    G +  + +   YG P++QGITQ +  
Sbjct: 39  LTRPTRPDKARRLGYKAKQGYVVYRVRVRRG---GRKRPVPKGIVYGKPKHQGITQLKFQ 95

Query: 472 EPKXS---QRAGTRKKGAL 519
             K S   +RAG RK G L
Sbjct: 96  RNKRSVAEERAG-RKLGGL 113


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
 Frame = +2

Query: 614 IPGXSPLEXPSXRSPVPTLXXTGYLFRLSPLRETVAPSPXXPPXRYFXFXXXXLPXPTWX 793
           +PG +PL  P    P+P L     L  ++  R   +  P  P  +           PT  
Sbjct: 537 VPGPAPLPRP----PMPLLRPPQPLPLVNVPRFQPSAMPYPPHQQPHLMQGVPHMMPTMH 592

Query: 794 VXPXXP----PXXXRXXGPLXXXTXXXXXPPPG*NPXFXXP 904
             P  P    P   R  G +         PPPG NP    P
Sbjct: 593 PPPPPPIPGQPQVIRMPGSMGPMPTNIPPPPPGQNPYMPGP 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,084,406
Number of Sequences: 37544
Number of extensions: 342235
Number of successful extensions: 619
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)