Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C05
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.41 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   5.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 404  YRSPQPNDRAQRVSEARKRKSAQYANRLSPRVG 306
            Y  PQP +  Q  ++A+ +  +Q AN+  P  G
Sbjct: 997  YTPPQPANAQQGQAQAQAKPQSQEANKPKPATG 1029


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 431 PYYRL*VSXYRSPQPNDRAQRVSEARKRKSAQY 333
           PY +L V   R   P    QRV +  KR+  +Y
Sbjct: 160 PYKKLSVEVVRREHPFWDDQRVEQEAKRRFEKY 192


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 489 LAXLWLTXSFLRYPLILW 436
           +A +W+  S + +P I+W
Sbjct: 167 IAIVWICSSAISFPAIVW 184


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 548  GGGAYGKTASNAPFLRVPALWLXFG 474
            G G   K A+  P  RVPA    FG
Sbjct: 1296 GEGQSSKVAAQVPTNRVPARITSFG 1320


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 548  GGGAYGKTASNAPFLRVPALWLXFG 474
            G G   K A+  P  RVPA    FG
Sbjct: 1292 GEGQSSKVAAQVPTNRVPARITSFG 1316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,452
Number of Sequences: 438
Number of extensions: 3580
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)