Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C05
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)            33   0.20 
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)            33   0.20 
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   3.2  
At1g30780.1 68414.m03763 F-box family protein                          28   7.4  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   9.8  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +1

Query: 304 RPTRGE--RRFAYWALFRFLASLTRCARSFGCGERYXLTQRR*YGYPQNQGITQERXCEP 477
           RPTR +  RR  Y A   F+    R  R    G +  + +   YG P NQG+TQ +    
Sbjct: 41  RPTRPDKARRLGYKAKQGFVVYRVRVRRG---GRKRPVPKGIVYGKPTNQGVTQLKFQRS 97

Query: 478 KXS---QRAGTRKKGALLAV 528
           K S   +RAG RK G L  V
Sbjct: 98  KRSVAEERAG-RKLGGLRVV 116


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +1

Query: 304 RPTRGE--RRFAYWALFRFLASLTRCARSFGCGERYXLTQRR*YGYPQNQGITQERXCEP 477
           RPTR +  RR  Y A   F+    R  R    G +  + +   YG P NQG+TQ +    
Sbjct: 41  RPTRPDKARRLGYKAKQGFVVYRVRVRRG---GRKRPVPKGIVYGKPTNQGVTQLKFQRS 97

Query: 478 KXS---QRAGTRKKGALLAV 528
           K S   +RAG RK G L  V
Sbjct: 98  KRSVAEERAG-RKLGGLRVV 116


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 27/96 (28%), Positives = 31/96 (32%)
 Frame = +2

Query: 617 PGXSPLEXPSXRSPVPTLXXTGYLFRLSPLRETVAPSPXXPPXRYFXFXXXXLPXPTWXV 796
           P  +PL  PS  SP P       +F   P   T  P P  PP  Y        P P +  
Sbjct: 397 PVVTPLPPPSLPSPPPPAP----IFSTPPTL-TSPPPPSPPPPVYSPPPPPPPPPPVYSP 451

Query: 797 XPXXPPXXXRXXGPLXXXTXXXXXPPPG*NPXFXXP 904
            P  PP       P          PPP   P +  P
Sbjct: 452 PPPPPPPPP----PPVYSPPPPPPPPPPPPPVYSPP 483


>At1g30780.1 68414.m03763 F-box family protein 
          Length = 482

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 728 PXXPPXRYFXFXXXXLPXPTWXVXPXXPP 814
           P  PP  +  F    LP P W   P  PP
Sbjct: 89  PLLPPPAFPDFEKPRLPVPVWPSLPEYPP 117


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 339 PIRKPPLPARWPIH*CRKNLP 277
           P   PP P R P H CRKN P
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDP 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,914,778
Number of Sequences: 28952
Number of extensions: 237736
Number of successful extensions: 386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)