Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C03
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical...    31   1.1  
Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical p...    30   2.5  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>AF002198-10|AAF99937.1|  471|Caenorhabditis elegans Hypothetical
           protein F35F10.12 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 189 DPDPFFAQPT-VGNGYEPIDNRPYIVNPPKDYN--PNGNGYEPIDNGAYYVDRPQGPTLL 359
           DP+   +QPT +G G  P    P  V PP  Y   P  +G    DNGA     P GP   
Sbjct: 345 DPNLPPSQPTPIGGGVAPAGVAPAGVVPPPGYGFLPMTDG---TDNGAGDTPYPVGPPYP 401

Query: 360 QAYPFPWCSRWEVKN 404
              P P+ S  E K+
Sbjct: 402 SDVPAPYPSGDEPKD 416


>Z81103-7|CAB03211.3|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +3

Query: 210 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGP 350
           QP VGN Y+P    P   +PP  Y     GY P   G      P  P
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYP 133


>Z81103-5|CAD56592.2|  550|Caenorhabditis elegans Hypothetical
           protein M04G12.4b protein.
          Length = 550

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +3

Query: 210 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGP 350
           QP VGN Y+P    P   +PP  Y     GY P   G      P  P
Sbjct: 62  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYP 104


>Z81088-12|CAD56587.2|  579|Caenorhabditis elegans Hypothetical
           protein M04G12.4a protein.
          Length = 579

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/47 (36%), Positives = 19/47 (40%)
 Frame = +3

Query: 210 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGP 350
           QP VGN Y+P    P   +PP  Y     GY P   G      P  P
Sbjct: 91  QPLVGNSYDP----PVRFDPPYAYRATATGYMPTVPGLSTNSSPYYP 133


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 268 LPKTTTLMETATNLSTTVHITWTVPKXRPYFKPTPFPGAR 387
           +P T    E A+ + T++    T PK  P  +P P PG R
Sbjct: 23  IPPTVFRFEKASKIGTSLD---TTPKELPIRRPVPLPGPR 59


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 268 LPKTTTLMETATNLSTTVHITWTVPKXRPYFKPTPFPGAR 387
           +P T    E A+ + T++    T PK  P  +P P PG R
Sbjct: 23  IPPTVFRFEKASKIGTSLD---TTPKELPIRRPVPLPGPR 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,595,625
Number of Sequences: 27780
Number of extensions: 251403
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)