Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C03
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13760.1 68418.m01604 expressed protein similar to unknown pr...    31   1.3  
At2g28940.1 68415.m03517 protein kinase family protein contains ...    29   4.1  
At1g22900.1 68414.m02860 disease resistance-responsive family pr...    29   4.1  
At1g56210.1 68414.m06460 copper chaperone (CCH)-related low simi...    29   5.4  
At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putati...    28   7.2  
At1g72110.1 68414.m08335 expressed protein                             28   7.2  
At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta...    28   9.5  

>At5g13760.1 68418.m01604 expressed protein similar to unknown
           protein (gb AAF63775.1)
          Length = 569

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 114 LALLAMANAQDPVRVVENADSVVIXDPDPFFAQPTVGNGYEPIDNRPYIVNPP 272
           LA L   N  +P+R++ N  S     P P  AQP   +  +P    P    PP
Sbjct: 47  LASLNRLNPTNPLRIIVNGGSRFTTPPPPNLAQPLRSSSRQPPPPPPRPQTPP 99


>At2g28940.1 68415.m03517 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 343

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 266 INDVRAVVNRFVAVSYSRLG-KEWIGVXDHN*VGVFHYPNGVLSVGHSQQSEDENHEEFX 90
           I  +  ++N  +   YS  G KEWI   + N +GV ++PN V  VG+    ++   +   
Sbjct: 9   IRRLMLLLNSLIVKVYSVQGHKEWIN--EVNFLGVVNHPNLVKLVGYCADDDERGMQRLL 66

Query: 89  FY 84
            Y
Sbjct: 67  VY 68


>At1g22900.1 68414.m02860 disease resistance-responsive family
           protein similar to pathogenesis-related protein [Pisum
           sativum] gi|4585273|gb|AAD25355
          Length = 187

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 310 STTVHITWTVPKXRPYFKPTPFPGARGGK 396
           ST + +T TV + +PY K TPF G +  K
Sbjct: 15  STVLLLTITVTQSKPYSKTTPFQGNKPDK 43


>At1g56210.1 68414.m06460 copper chaperone (CCH)-related low
           similarity to copper homeostasis factor
           [GI:3168840][PMID:9701579] and farnesylated proteins
           ATFP3 [GI:4097547] and GMFP7 [Glycine max][GI:4097573];
           contains PF00403 Heavy-metal-associated domain
          Length = 364

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +3

Query: 138 AQDPVRVVENADSVVIXDPDPFFAQPTVGNGYEPIDNRPYIVNPP------KDYNPNG 293
           AQ PV V    D+     P P ++   + NGY+P D  P    P        D NPNG
Sbjct: 307 AQPPVSV----DAASYYTPPPPYSYAYMHNGYQPSDQNPCQPRPSDSFELFSDENPNG 360


>At5g36150.1 68418.m04356 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650208]
           [PMID:11247608]; oxidosqualene cyclase; also highly
           similar to beta-amyrin synthase, lupeol synthase,
           cycloartenol synthase
          Length = 729

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 210 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY-YVDRPQG 347
           +PT+  GY  +    +  NPP DY    N +  I  G + Y D+ QG
Sbjct: 438 RPTLIKGYSYLRKSQFTENPPGDYI---NMFRDISKGGWGYSDKDQG 481


>At1g72110.1 68414.m08335 expressed protein
          Length = 479

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 466 NSYEILKYIVNTLFRY*-FSKIFFTSHREHQGK 371
           N+  I++ I NTL  +  FS I  T H EH+GK
Sbjct: 41  NASTIVEGIKNTLINHPRFSSILVTGHGEHKGK 73


>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-1) nearly identical to
           starch branching enzyme class II [Arabidopsis thaliana]
           GI:619939
          Length = 858

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 255 YIVNPPKDYNPNGNGYEP--IDNGAYYVDRPQGPTLLQAY 368
           Y V PP +   NG  Y+P   D  A+   RP+ PT L+ Y
Sbjct: 290 YSVQPPGEIPYNGVYYDPPEEDKYAFKHPRPKKPTSLRIY 329


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,847,808
Number of Sequences: 28952
Number of extensions: 238575
Number of successful extensions: 539
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)