Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C02
         (907 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.27 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.7  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   7.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
 Frame = +3

Query: 654 PXXPPPPPXXPPPPXXX---PXPPXXPPPPXPPXXPPPXPXP 770
           P    P P  PP        P  P  PP P PP  PP    P
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 24.2 bits (50), Expect = 1.4
 Identities = 19/62 (30%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
 Frame = +3

Query: 561 PPXXXPXXXPPXXXP-PXXPPPPPXPXPPPXXPXXPPPPPXXPPPPXXXPXPPXXPPPPX 737
           PP        P   P P    P P   P        PP P  PP     P PP  PP   
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPP----LPLPPIFPPTMI 194

Query: 738 PP 743
            P
Sbjct: 195 NP 196



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 675 PXXPPPPXXXPXPPXXPPPPXPPXXPPPXPXPXPPPPXPXXXXPXXPPXXXXP 833
           P   P P      P  PP        PP P   PP P P    P  PP    P
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQ-VPPLPLP----PIFPPTMINP 196


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 723 PPPPXPPXXPPPXPXPXPP 779
           PPPP P   PP  P    P
Sbjct: 736 PPPPHPHHQPPRNPVGTNP 754



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 663 PPPPPXXPPPPXXXPXPPXXPPPP 734
           PP P   P PP     P    P P
Sbjct: 231 PPHPGLSPHPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 723 PPPPXPPXXPPPXPXPXPP 779
           PPPP P   PP  P    P
Sbjct: 628 PPPPHPHHQPPRNPVGTNP 646



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +3

Query: 663 PPPPPXXPPPPXXXPXPPXXPPPP 734
           PP P   P PP     P    P P
Sbjct: 123 PPHPGLSPHPPHLSSHPAIVTPGP 146


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +1

Query: 721 PXPPPXPPXPXPXPXXPXXPPPPP 792
           P P      P P P  P  P P P
Sbjct: 71  PLPSDGTTSPEPDPEIPVAPEPAP 94



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 633 PXPPPXXPXXPPPPPXXPP 689
           P P P  P  P P P   P
Sbjct: 80  PEPDPEIPVAPEPAPLASP 98


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 627 PXPXPPPXXPXXPPPPPXXPPPPXXXPXPPXXPPPP 734
           P P   P      PPP    PP       P   P P
Sbjct: 267 PYPMQRPKSASLSPPPHVYNPPDHIQQATPYSAPGP 302


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 691 GGGXXGGGGGXXGXXGGGXGXGGG 620
           G      GGG  G   G  G GGG
Sbjct: 85  GENNDDSGGGRGGGRDGDRGDGGG 108


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/50 (28%), Positives = 14/50 (28%)
 Frame = +3

Query: 516 PXXPXXFXPXPPHPXPPXXXPXXXPPXXXPPXXPPPPPXPXPPPXXPXXP 665
           P  P    P    P P    P         P  PP    P PPP     P
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPP---TPSPPPEERLTP 111



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +3

Query: 666 PPPPXXPPPPXXXPXPPXXPPPPXPPXXPPPXPXPXPPPPXPXXXXP 806
           P  P   PP    P P    P         P   P P PP      P
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTP 111



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +3

Query: 624 PPXPXPPPXXPXXPPPPPXXPPPPXXXPXPPXXPPPPXPP 743
           P  P   P     P P    P         P  PP P PP
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPP 104


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/27 (33%), Positives = 9/27 (33%)
 Frame = +3

Query: 675  PXXPPPPXXXPXPPXXPPPPXPPXXPP 755
            P   P     P PP    PP P    P
Sbjct: 1367 PEWQPTEWHPPIPPTSEKPPLPEELKP 1393


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +3

Query: 615 PPPPPXPXPPPXXPXXPPPPPXXPPP 692
           PPP P     P        P   PPP
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPP 36


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +3

Query: 621 PPPXPXPPPXXPXXPPPPPXXPPPPXXXPXPPXXPPPPXPP 743
           P P    P        PP     PP     P   P P  PP
Sbjct: 45  PDPGSCDPSVGLRQGIPPHHYGGPPSGGQPPQGMPYPRFPP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,833
Number of Sequences: 336
Number of extensions: 5296
Number of successful extensions: 55
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)