Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_C01
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z81520-3|CAB04222.1|  214|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
 Frame = -3

Query: 381 RKP--VRSVCRGHH*RTXXX*PPLPKXPXXXXPKVPKTXPPPXXXSQVTKS 235
           +KP  V S    HH  T    PP P  P    P    T PPP    Q   S
Sbjct: 135 KKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQKPSS 185


>Z81520-3|CAB04222.1|  214|Caenorhabditis elegans Hypothetical
           protein F31B9.3 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 136 CVXAXVSMPPGLRXXVSDHQPIFKVXPTPSRYSRLCHL 249
           CV   V  P G R  V +   + +  P PS Y+RLC++
Sbjct: 100 CVDMYVDFPDGQRMPVDEF--VKQYAPGPSFYNRLCNM 135


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
 Frame = -3

Query: 381 RKP--VRSVCRGHH*RTXXX*PPLPKXPXXXXPKVPKTXPPPXXXSQ 247
           +KP  V S    HH  T    PP P  P    P    T PPP    Q
Sbjct: 135 KKPSIVSSSSFSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQ 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,481,842
Number of Sequences: 27780
Number of extensions: 138657
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)