Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B24
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.8  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.6  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   4.8  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   4.8  
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    26   8.4  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 236 ESMLDTHSLWSNLANEMQHLDDMMKELSLNFXSIINEGRVEGDKYQISIHLPGYEQKDIN 415
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 416 VKAKN 430
            K  N
Sbjct: 163 SKKLN 167


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 162 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 257
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 287 QHLDDMMKELSLNFXSIINEGRVEG 361
           +HLDD+++  S  F S+I+    EG
Sbjct: 294 KHLDDLLENQSTGFFSMIDSSNFEG 318


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +2

Query: 254 HSLWSNLANEMQHLDD--MMKELSLN-FXSI-INEGRVEGDKYQISIHLPGY---EQKDI 412
           H++  N A E   ++D  ++K +S   F S+ + + R  GD + I I        + + I
Sbjct: 573 HTIVPNSAPEHPSINDYKILKPISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVI 632

Query: 413 NVKAKNGVLMVQANSAF 463
           NV+A+  +LM Q  S F
Sbjct: 633 NVRAERAILMSQGESPF 649


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
 Frame = +2

Query: 500 VNSEGSWVYEKDVLKITFPLKQ-KQXEDSKRPVAEPTETXPTNVSREEMEFXTXSXV--R 670
           VNS G+   E   +   F ++  ++ E+ K  +  P    P   S+EE E         R
Sbjct: 323 VNSPGALSVEATYINQNFCVQALRETEEEKYKLPHPN---PFYNSKEESEPLAAHGYIYR 379

Query: 671 DVDVGLETXXKXNEIAKAVXAXXYAVXXXXDXEXLXI 781
           DVD+ LET  K  ++        Y      D + + I
Sbjct: 380 DVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,692
Number of Sequences: 5004
Number of extensions: 49204
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)