Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B23
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   164   1e-41
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   164   2e-41
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    29   1.2  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    29   1.2  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    29   1.2  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.5  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   4.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   8.2  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  164 bits (399), Expect = 1e-41
 Identities = 79/154 (51%), Positives = 110/154 (71%)
 Frame = +1

Query: 232 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 411
           K A++ LKGR+ EVSLADLQ D   E SFRK +L  E +QG++ L +F+G D+T+DKLR 
Sbjct: 55  KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112

Query: 412 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 591
           +V+KWQ+ IEAN  +KTTDGY+ R+F IGFT++     +KT YAQ +Q+RAI +KM ++I
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172

Query: 592 TRDVTNSELREVVNKLIPDSIAKDIEKACHGIYP 693
                   ++E+V KLIP+ I + IEKA + IYP
Sbjct: 173 QNQANGCSMKELVQKLIPEVIGRAIEKATNNIYP 206



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 24/45 (53%), Positives = 33/45 (73%)
 Frame = +3

Query: 126 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQXNENCFGRIEGK 260
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT   +N    ++G+
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 692 PLRDVCIRXVKVLKXPRFEISKLMELH 772
           PL++V +R VK+LK P+ +  KL+ELH
Sbjct: 206 PLQNVFVRKVKILKAPKHDAQKLLELH 232


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  164 bits (398), Expect = 2e-41
 Identities = 78/154 (50%), Positives = 113/154 (73%)
 Frame = +1

Query: 232 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 411
           K A++ LKGR+ EVSLADLQ D   E +FRK +L  E +QG++ L +F+G+ +T+DKLR 
Sbjct: 55  KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112

Query: 412 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 591
           +V+KWQT IEA+  +KTTDGY+ RVF IGFT + +   +KT YAQ +Q+RAIR+KM ++I
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172

Query: 592 TRDVTNSELREVVNKLIPDSIAKDIEKACHGIYP 693
               ++  +RE+V KLIP+ I ++IE+A   I+P
Sbjct: 173 QNQTSSCSMRELVQKLIPEVIGREIERATGSIFP 206



 Score = 58.4 bits (135), Expect = 1e-09
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +3

Query: 126 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQXNENCFGRIEGK 260
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT   +N    ++G+
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +2

Query: 692 PLRDVCIRXVKVLKXPRFEISKLMELH 772
           PL++V +R VK+LK P+ +  KL+ELH
Sbjct: 206 PLQNVLVRKVKILKAPKHDAQKLLELH 232


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
 Frame = +1

Query: 229 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 408
           TK+A    KG   +V++  L+   DAE + + F  I EY++  N        D T  K  
Sbjct: 91  TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144

Query: 409 WMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 531
             + +W ++ E    +    D  +    C+   ++  L+  K
Sbjct: 145 -FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 262 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 435
           VF+V   + + D    R+  +   +A   Q R V C  H MDL  + LR +V  ++   L
Sbjct: 86  VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143

Query: 436 IEANIDVKTT 465
           +E + D++TT
Sbjct: 144 LETSKDLETT 153


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 323 LRKDLSASVSACRSARETSKTLPFNPSEAIFVXLGTVDKRGADLPLAEHRRSLDIVP-IF 147
           + KD S + +A  SA E    +P      +FV  GTV    +DLP+   R  L ++   F
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPILLPRMVLRVLKGKF 390

Query: 146 ASEWVDNLLLNT 111
            ++  + L +NT
Sbjct: 391 EADPYEALRINT 402


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -1

Query: 764 PSTSRSRNGASSTLSPXGCKHRAE 693
           PSTSR RN   S LS    KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 429 LPFFNHPPELIGCEVHAVEVAEHITS 352
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 489  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 581
            LHW+    L+  +Q +  P H+GQ  S  + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,278,030
Number of Sequences: 5004
Number of extensions: 66597
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)