Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_B23
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 200 2e-51
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 197 8e-51
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 196 1e-50
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994... 31 1.6
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977... 29 4.9
06_03_0290 - 19193707-19193752,19193822-19194090 28 8.6
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 200 bits (487), Expect = 2e-51
Identities = 97/155 (62%), Positives = 122/155 (78%)
Frame = +1
Query: 229 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 408
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 409 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 588
+VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 589 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYP 693
+ ++ +L+E+V+K IP+ I K+IEKA I+P
Sbjct: 172 MANQASSCDLKELVSKFIPEVIGKEIEKATSSIFP 206
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +3
Query: 129 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 224
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQ
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQ 52
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = +2
Query: 692 PLRDVCIRXVKVLKXPRFEISKLMELH 772
PL++V +R VK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFVRKVKILKAPKFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 197 bits (481), Expect = 8e-51
Identities = 96/155 (61%), Positives = 121/155 (78%)
Frame = +1
Query: 229 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 408
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 409 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 588
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 589 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYP 693
+ ++ +L+E+V+K IP+ I K+IEKA I+P
Sbjct: 172 MVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFP 206
Score = 57.2 bits (132), Expect = 2e-08
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 129 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 224
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQ
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQ 52
Score = 39.9 bits (89), Expect = 0.003
Identities = 15/27 (55%), Positives = 23/27 (85%)
Frame = +2
Query: 692 PLRDVCIRXVKVLKXPRFEISKLMELH 772
PL++V +R VK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFVRKVKILKAPKFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 196 bits (479), Expect = 1e-50
Identities = 96/155 (61%), Positives = 120/155 (77%)
Frame = +1
Query: 229 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 408
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 409 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 588
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 589 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYP 693
+ + +L+E+V+K IP+ I K+IEK+ I+P
Sbjct: 172 MANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFP 206
Score = 57.2 bits (132), Expect = 2e-08
Identities = 22/32 (68%), Positives = 29/32 (90%)
Frame = +3
Query: 129 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 224
VDPF++KDWYD+KAP++FS R +G TLV+RTQ
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQ 52
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +2
Query: 692 PLRDVCIRXVKVLKXPRFEISKLMELH 772
PL++V IR VK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFIRKVKILKAPKFDLGKLMEVH 232
>02_05_0960 +
33097510-33097821,33098846-33099043,33099174-33099446,
33099575-33099677,33100297-33100415,33100968-33101759
Length = 598
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 544 QHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPSARCLHPXGE 723
Q + R+ + I D+T S + E V D +++ +K H YP + +H
Sbjct: 456 QQLENELYRRSEDDEIVEDMTESAITEEVGGTAEDVLSETNDKEVHRFYPPGKIMHILTS 515
Query: 724 SVE 732
++E
Sbjct: 516 TIE 518
>02_02_0398 -
9777596-9778146,9778229-9778400,9778522-9778639,
9778751-9779014,9779287-9779354,9779520-9780145,
9780257-9780412,9780528-9780625,9780741-9780832,
9780940-9781011
Length = 738
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 133 THSLAKIGTMSRLRLCSARGKSAPRLSTVPXXTKIASEGLKGRVF 267
T +LA I S++ LCS PRLS ++ G G +F
Sbjct: 374 TQTLASINITSKVVLCSPPSLMPPRLSLGDIIGRVIKAGANGLIF 418
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 365 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 454
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,547,369
Number of Sequences: 37544
Number of extensions: 469804
Number of successful extensions: 1313
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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