Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B23
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   204   6e-53
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           204   8e-53
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.8  
At2g16250.1 68415.m01861 leucine-rich repeat transmembrane prote...    29   3.1  
At3g09000.1 68416.m01053 proline-rich family protein                   28   9.5  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  204 bits (498), Expect = 6e-53
 Identities = 97/155 (62%), Positives = 123/155 (79%)
 Frame = +1

Query: 229 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 408
           TKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVLC F GMD TTDKLR
Sbjct: 54  TKIASEGLKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLR 111

Query: 409 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 588
            +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TCYAQ +Q+R IR+KM +I
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDI 171

Query: 589 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYP 693
           + R+ ++ +L+++V K IP++I ++IEKA  GIYP
Sbjct: 172 MVREASSCDLKDLVAKFIPEAIGREIEKATQGIYP 206



 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 24/32 (75%), Positives = 29/32 (90%)
 Frame = +3

Query: 129 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 224
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQ
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQ 52



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/27 (55%), Positives = 23/27 (85%)
 Frame = +2

Query: 692 PLRDVCIRXVKVLKXPRFEISKLMELH 772
           PL++V IR VK+LK P+F++ KLM++H
Sbjct: 206 PLQNVFIRKVKILKAPKFDLGKLMDVH 232


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  204 bits (497), Expect = 8e-53
 Identities = 98/155 (63%), Positives = 123/155 (79%)
 Frame = +1

Query: 229 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 408
           TKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVL  F GMD TTDKLR
Sbjct: 54  TKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLR 111

Query: 409 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 588
            +VKKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEI 171

Query: 589 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYP 693
           + ++ ++ +L+E+V K IP++I ++IEKA  GIYP
Sbjct: 172 MVKEASSCDLKELVAKFIPEAIGREIEKATQGIYP 206



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +3

Query: 129 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQ 224
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQ
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQ 52



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +2

Query: 692 PLRDVCIRXVKVLKXPRFEISKLMELH 772
           PL++V IR VK+LK P+F++ KLME+H
Sbjct: 206 PLQNVFIRKVKILKAPKFDLGKLMEVH 232


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 591 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 427
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At2g16250.1 68415.m01861 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 915

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = -3

Query: 729 NTFTXRMQTSRRGVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSD 565
           N FT  +  S    D +A ++D+  N    +L   L  FR+ D++ N F   L D
Sbjct: 331 NNFTGLLPYSSYDSDQIAEMVDISSNTFYGELTPILRRFRIMDLSGNYFEGKLPD 385


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 28/109 (25%), Positives = 55/109 (50%)
 Frame = +2

Query: 365 SATSTAWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP*ANARRATP 544
           S++S A   +P SSG    + R +S+P    R+       +++   P+ T  +N+R +TP
Sbjct: 137 SSSSVAGLRRPSSSG----SSRSTSRPATPTRRSTTP---TTSTSRPVTTRASNSRSSTP 189

Query: 545 STLRSEQSERKCVKSLHATSLTLNSGRW*TS*FLTPLPRTSRRPAMAST 691
           ++  +  + R    +    + T +SG   ++   TP  R++ RP+ AS+
Sbjct: 190 TSRATLTAARATTSTAAPRTTTTSSG---SARSATP-TRSNPRPSSASS 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,648,290
Number of Sequences: 28952
Number of extensions: 363116
Number of successful extensions: 1054
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)