Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B22
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       29   3.7  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   6.5  
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56...    28   8.6  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = +1

Query: 190 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGPTLLQAYP 330
           Y P    P    PP  Y P+  GY P   GAY   PP G      YP
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYP 96


>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
 Frame = +1

Query: 247  NGNGYE-----PIDNGAYYVDPPQGPTLLQAYPFP 336
            +GN Y      P  N AY++ PP  P     YP+P
Sbjct: 1189 HGNNYHQPPSVPPPNNAYHLQPPPHPPFPNQYPYP 1223


>08_01_0080 +
           566509-566746,566904-567151,567347-567532,567639-567734,
           567836-567907,567990-568106,570531-571676
          Length = 700

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 226 PPKDYNPNGNG---YE-PIDNGAYYVDPPQGPTLLQAYP 330
           PP++Y P G G   Y  P  N  YY  PP GP   Q YP
Sbjct: 452 PPQNYGP-GYGDPRYNAPAPNQQYYGQPPAGPQ--QGYP 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,990
Number of Sequences: 37544
Number of extensions: 246874
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)