Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_B22
(888 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 31 1.2
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6) 31 1.6
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21) 29 3.8
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 29 3.8
SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024) 29 6.6
SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22) 29 6.6
SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 29 6.6
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 28 8.8
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +2
Query: 164 WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 295
+ T+ T T TT T+ I TTT T TN +TTV+ T T
Sbjct: 538 YTTIVTITITTNYTTTVTTTITNYTTTFTITITNYTTTVNTTIT 581
>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
Length = 127
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +2
Query: 164 WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHIT 289
W T T T T TT T+ TTT +T T +TT IT
Sbjct: 53 WTTTTTSTITT--TTTTTTTTKTTTTTTTKTTTTTATTTEIT 92
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +1
Query: 190 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGPTLLQAYPFP 336
Y P N PY P Y P N P A Y PP P YP P
Sbjct: 116 YPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPP 164
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +2
Query: 170 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKGR----PYFKPTPFP 337
T TQ+T T + +T + + TTTL T +TT T TLP + P T FP
Sbjct: 220 TTTQQTTTTIPSTKQPTTTQQTTTTLPST-KQPTTTQQTTTTLPSTKQPTTPQLTTTTFP 278
Query: 338 GAR 346
+
Sbjct: 279 STK 281
>SB_18179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 170 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTT 277
T+T TAT TT T+ TTT T T +TT
Sbjct: 28 TITTATATTTTTTTTTTTTTTTTTTTTTTTTTTTTT 63
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +2
Query: 170 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWT 295
T T T T TTA + TTT T T +TT T T
Sbjct: 14 TTTTTTTTTAATTATITTATATTTTTTTTTTTTTTTTTTTTT 55
>SB_38893| Best HMM Match : UMPH-1 (HMM E-Value=2.3e-21)
Length = 372
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 241 NPNGNGYEPIDNGAYYVDPPQGPTLLQAYPFPWCS 345
N NG+G P + G V+ P P +L+ P W S
Sbjct: 25 NQNGSGISPEEKGPLMVECPGDPLVLERPPPRWSS 59
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 170 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKGR 310
T + T +L+TTA + P+TTT +L+TT + T P GR
Sbjct: 759 TAPEATTASLVTTAPEATTAPETTT-----ASLATTASLATTAPVGR 800
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 170 TLTQETATNLLTTARTSLILPKTTTLME-TATNLSTTVHITWTLPK 304
T + T +L+TTA + P+TTT E T +TT + T P+
Sbjct: 134 TAPEATTASLVTTAPEATTAPETTTAPEATTAPETTTASLVTTAPE 179
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 146 KNPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTT 277
K P+ KT TAT T A + + P+TT + ET L TT
Sbjct: 1682 KAPVDQLKTKQPTTATAKTTAAPETTVAPETTVVPETTPALETT 1725
>SB_50455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 170 TLTQETATNLLTTART--SLILPKTTTLMETATNLSTTVHITWT 295
T+T TN TT T + I+ TTT+ T T ++TT+ T T
Sbjct: 8 TVTTTIITNATTTIITLSTTIITTTTTITTTTTTITTTITPTIT 51
>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
Length = 249
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 170 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTL 298
T T TA +++T T+ TTT+ T T +TT+ IT T+
Sbjct: 125 TTTTITAV-IISTTTTTTSTANTTTITATITTTTTTITITATI 166
>SB_51906| Best HMM Match : DUF1621 (HMM E-Value=0.22)
Length = 266
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 191 TNLLTTARTSLILPKTTTLMETATNLSTTVHITWTL 298
TN++TT+ T++I T T+ T T ++ T+ IT T+
Sbjct: 168 TNIITTSNTNIITTTTITITITIT-ITITITITITI 202
>SB_43660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 143 LKNPLR*WKTLTQETAT-NLLTTARTSLILPKTTTLMETATNLSTTVHITWTLPKGRP 313
L P+ T+T T T +TT T++ + TTT+ T T TT T T G P
Sbjct: 12 LGTPITTITTITVTTITVTTITTTITTITITTTTTITITITITITTTITTITTTTGDP 69
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = +2
Query: 131 LWPTLKNPLR*WKTLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTLP 301
L+PT P R + T T T L T RT LP T + T + + T TLP
Sbjct: 139 LYPTQSAPYRLYPTQTVRTIQTLPNTVRTIQTLPSTDSAHRT-DHPTQTESTVQTLP 194
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 170 TLTQETATNLLTTARTSLILPKTTTLMETATNLSTTVHITW 292
T T T TTA T+ TTT T T +TT+ I W
Sbjct: 526 TATATTTATATTTATTAATATTTTTTTTTNTTTNTTI-IIW 565
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,549
Number of Sequences: 59808
Number of extensions: 268214
Number of successful extensions: 1264
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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