Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B20
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    30   2.6  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   6.0  

>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 395 VNYILKLTSRLNNTSIYGVRFKDHFPIALAEPRTSIAGPALTMP 264
           + ++L L+  L   S Y +  K HFP       TS+ GPA+ +P
Sbjct: 610 LEHLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = +1

Query: 538 PXXXXXPPXXPXXXXXXPAGR-GSPXXXGXXAPPT*XXXXXXFXPPPPP 681
           P     PP  P      P  R G P   G   PP          PPPPP
Sbjct: 304 PGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = +1

Query: 538 PXXXXXPPXXPXXXXXXPAGR-GSPXXXGXXAPPT*XXXXXXFXPPPPP 681
           P     PP  P      P  R G P   G   PP          PPPPP
Sbjct: 314 PGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,722,313
Number of Sequences: 27780
Number of extensions: 254996
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)