Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B19
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    30   1.8  
Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    28   9.5  

>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +1

Query: 442 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYK 612
           +  GI +E++ E   SKR      P   +FS+ S  +PL S+ ++  Q ++   ++    
Sbjct: 19  EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76

Query: 613 DTRRFPPGKLPRALSCFRPCRLP 681
            T    PG+ P     + P RLP
Sbjct: 77  GTNAGVPGEFP-----YGPGRLP 94


>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +1

Query: 442 QNQGITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYK 612
           +  GI +E++ E   SKR      P   +FS+ S  +PL S+ ++  Q ++   ++    
Sbjct: 19  EETGIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTP 76

Query: 613 DTRRFPPGKLPRALSCFRPCRLP 681
            T    PG  P     + P RLP
Sbjct: 77  GTNAGVPGAFP-----YGPGRLP 94


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 683 SGKRQGRKQESARGSXPGGKRLVSL*SC 600
           SG R+GRK+++A+GS    K++  L +C
Sbjct: 29  SGPRRGRKRKAAKGSEIEMKKVAKLNTC 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,222,413
Number of Sequences: 27780
Number of extensions: 338694
Number of successful extensions: 772
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)