Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_B19
(841 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb... 30 1.7
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 29 2.9
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 29 2.9
At5g45050.2 68418.m05524 disease resistance protein-related simi... 29 5.1
At5g45050.1 68418.m05523 disease resistance protein-related simi... 29 5.1
At4g04490.1 68417.m00651 protein kinase family protein contains ... 29 5.1
At3g20830.1 68416.m02634 protein kinase family protein contains ... 28 6.7
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 28 6.7
>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
(RbohA) / NADPH oxidase identical to respiratory burst
oxidase protein A from Arabidopsis thaliana [gi:3242781]
Length = 902
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 543 RPPDEHHKNRRSSQRWRNPTGL*RYQAFPPWXAPS 647
RPPDEH NR S+ W R P+ AP+
Sbjct: 667 RPPDEHRLNRADSKHWDYIPDFPRILIDGPYGAPA 701
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = -2
Query: 594 FATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPLS 415
F S S+D+ YG A P YGS P G+ + YP + + P++
Sbjct: 138 FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPVT 197
Query: 414 ELIPL 400
PL
Sbjct: 198 GYAPL 202
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 453 PLILWITVLPPLSELIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAEKTSH 280
P+ L IT++PP + + A++P + N+L P+ R I AEK +H
Sbjct: 264 PVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAEKPTH 316
Query: 279 TSTLNLKHKM 250
T LN +K+
Sbjct: 317 TDELNFMNKL 326
>At5g45050.2 68418.m05524 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1344
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 352 PLPRSLTRCARSFGCGERYQLTQRR 426
P PRS RCA S GC R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193
>At5g45050.1 68418.m05523 disease resistance protein-related similar
to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
profiles PF03106: WRKY DNA -binding domain, PF00931:
NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1372
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 352 PLPRSLTRCARSFGCGERYQLTQRR 426
P PRS RCA S GC R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221
>At4g04490.1 68417.m00651 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 658
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +1
Query: 499 GTVKRPRC---WRFSIGSAPLTSITKIDAQVRGGETRQDY--KDTRRFPP 633
GTV RP C W + ++ ++ A R +TRQDY K R F P
Sbjct: 230 GTVARPSCYFRWDDYRFAGAFDNLERVPAPPRSPQTRQDYRVKKGRMFQP 279
>At3g20830.1 68416.m02634 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 408
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 343 PIRKPPLPARWPIH*CRKNLPHL 275
P PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -2
Query: 594 FATSDLSVDFCDARQGG-GAYGKTPATRPFYGSWPFAGLLLTCSFLRYPLILWITVLPPL 418
F S S+D+ Q YG A P YGS P G+ + YP + + P+
Sbjct: 138 FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGNGPV 197
Query: 417 SELIPL 400
+ PL
Sbjct: 198 TGYAPL 203
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,452,505
Number of Sequences: 28952
Number of extensions: 323353
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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