Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B17
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.50 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.7  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.6  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   6.2  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   8.2  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 730 CLRCWGKSGNWNSWR 686
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +3

Query: 294 YENFMMMYKVGFLPKNLEFSIFYEKMREEAIALFKLFYYAKD-FECFYKTACYARVYMNQ 470
           Y  FM+      + + L+ ++F     +EAI +F  F  ++D F+   +          +
Sbjct: 353 YHKFMIPSDHVVISQELQDAVF-----KEAIDMFGAFIPSRDGFDLVVRNVAIELNIPPE 407

Query: 471 GMFLYAYYIAIIQRLRHRQLRSTCSIRSLSSI 566
                 Y I + Q L H      CS++ LS+I
Sbjct: 408 KALQLRYSIPVFQNLEHNINIGRCSLKKLSTI 439


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 474 MFLYAYYIAIIQRLRHRQLRSTCSIRSLSS 563
           +FL A Y  I+ R+R R  RS    +S+SS
Sbjct: 168 LFLLARYYQIVMRIRQRYYRSPTYQQSMSS 197


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 442 HATPEST*TRECSYTPTT*LLSSASDTANFVLP--APYEAYPQYFVNME 582
           HA  E++ T+E   TP + + SS ++    +LP   P +  P Y  ++E
Sbjct: 787 HAENEASITKEVHSTPLSDVASSEAEKVYTILPIEVPTDPLPNYSSDVE 835


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 760 LNAYYYYFHSHLPFWWXSGKYGAFK 834
           LN Y  YF +H P      K+G+FK
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSFK 143


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 323 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEKRQNLLLLF 165
           DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,721
Number of Sequences: 5004
Number of extensions: 68603
Number of successful extensions: 247
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)