Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B16
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    29   4.9  
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    28   8.6  
04_03_0765 + 19376949-19377156,19377637-19377833,19378259-193784...    28   8.6  

>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 216 LCFGYMKLYSYNQETKNCEEFIYGGCQG-NDNRFSTLAECEQKCIN*LIIS 365
           LCF        N  T+      Y GCQG   N  ST+   E K ++ ++ S
Sbjct: 324 LCFLQQTRSHQNMITQEGSSLTYNGCQGITSNFLSTVENAEDKFVHKIVTS 374


>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 80  N*RRHVEISAFPIRGRFLRCVLDISHE**ANDGLADMRAGFW 205
           N R  + ++ FPI  R +R    ++ E    D   D RAGFW
Sbjct: 666 NGRARIFVNGFPISDRAVRKAEKLAGEICPGDYWYDYRAGFW 707


>04_03_0765 +
           19376949-19377156,19377637-19377833,19378259-19378448,
           19380263-19380654,19380689-19380802,19381159-19381593,
           19381936-19382038,19382080-19382177,19383217-19383552
          Length = 690

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = -3

Query: 223 KQRPASPKACSHIGKSVVGSSLM-TDVKHAAKKTPANRKSTDLNMTSLIQIXVCLPTIXN 47
           ++R A+    S+  + +  +S++ +DV+   +K    + +TD   T++  +   +     
Sbjct: 499 EKRRAAATTSSNAQEQICRTSVICSDVRQKERKEDVVQLTTDRASTNVEALGAAVGPAAA 558

Query: 46  LXGVPIXXXXGGG 8
           L GVP+    GGG
Sbjct: 559 LVGVPVGSGGGGG 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,010,782
Number of Sequences: 37544
Number of extensions: 305028
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)