Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B14
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   4.8  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   4.8  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    26   8.3  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    26   8.3  

>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +1

Query: 115 HGV*FSKYNDKPQVSMTKSKRKYAITDKFLPRLAKNLCTRKGSRRANTGNRLEHAVL 285
           H +    Y D+ Q  ++K + +YA+   F       LC +   R   TG++ E   L
Sbjct: 108 HQITLRSYRDRTQ-GLSKDQFRYALWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFAL 163


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 49  WTXLXLLPVGICSRELFTWQTH 114
           W  L LLP    S+    WQ+H
Sbjct: 242 WRLLCLLPASFASQSTIAWQSH 263


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 299 CWMWVSTACSRRFPV 255
           C++WVS AC R+F V
Sbjct: 710 CFLWVSGACVRQFGV 724


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 352 PSTGVSLTRVKEIKLNAXSHGSWR*MXXRPXXPFTXXXSFD 474
           P T +++ R+K+    A SH   R M   P  P      FD
Sbjct: 199 PGT-INIKRLKDANFQAPSHSGIRCMSIHPYFPLLLTCGFD 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,634
Number of Sequences: 5004
Number of extensions: 29655
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)