Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B14
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0265 - 21788531-21789798,21789914-21789947                       32   0.54 
04_04_1487 - 33919654-33920399,33920676-33920817                       29   3.8  
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709...    29   5.0  
07_03_1639 + 28305801-28305958,28306240-28306249                       29   5.0  
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631...    29   5.0  
08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204     28   8.7  
06_03_0142 + 17208577-17209485,17209578-17210195                       28   8.7  

>11_06_0265 - 21788531-21789798,21789914-21789947
          Length = 433

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -3

Query: 288 GEYRVF*AVPSIGAATTLPGAQVFGESWQEFVGDRVFSLRF 166
           G+ + +  V S+G    L   + F ESW +FVG RVF L F
Sbjct: 298 GDRQTYNLVQSLGKLLLL--VRYFRESWDQFVGVRVFELSF 336


>04_04_1487 - 33919654-33920399,33920676-33920817
          Length = 295

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 369 ADTGGRRMDDGGEGSSGTWRLGHVLDVGEYRV 274
           AD GG ++ +GG+G+ G  R   + D G  +V
Sbjct: 102 ADAGGEKVGEGGDGTIGGGRARELADAGGEKV 133


>12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,
            7097150-7097367,7097502-7097717,7097922-7098107,
            7098181-7098303,7098399-7098514,7099254-7099832,
            7101485-7101517,7102485-7103679,7103732-7103797,
            7104843-7104905,7105328-7105411
          Length = 1407

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 103  WQTHHGV*FSKYNDKPQVSMTKSKRKYAITDKFLPRLAKNLCTRKGSR 246
            ++ HH +   +Y D   +S  K   +Y I+D+FLP  A +L    GSR
Sbjct: 935  YEIHHKL---RYTDDALISAAKLSYQY-ISDRFLPDKAIDLIDEAGSR 978


>07_03_1639 + 28305801-28305958,28306240-28306249
          Length = 55

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 136 YNDKPQVSMTKSKRKYAITDKFLPRLAKNLCT--RKGSRR 249
           Y + PQV   K+ RK  ++D+F  +LAK++ +  RK SRR
Sbjct: 15  YGEYPQVQAEKA-RKRTLSDQFEAKLAKSMASQERKISRR 53


>03_06_0500 -
           34361139-34362006,34362295-34362818,34362908-34363125,
           34363259-34363406
          Length = 585

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 342 DGGEGSSGTWRLGHVLDVGEYRVF*AVPSIGAAT 241
           DGGE   G WRL  V  V E ++  A+  I  AT
Sbjct: 308 DGGEERRGAWRLATVTQVEETKLVLAMVPIWVAT 341


>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
          Length = 449

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 67  LPVGICSRELFTWQTHHGV*FSKYNDKPQVSMTKSKRKYAITDKFLPRLAKNL---CTRK 237
           LP G+ S    T+  +HG       D+        +R   IT   LP  AKNL   C RK
Sbjct: 212 LPAGVVSDGQATYWINHGG-----GDRLMSFDLTDERVATITS--LPVAAKNLNAGCLRK 264

Query: 238 GSRRANTGNRLEH 276
              R   GNR+ H
Sbjct: 265 ARGRLCVGNRIHH 277


>06_03_0142 + 17208577-17209485,17209578-17210195
          Length = 508

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -3

Query: 264 VPSIGAATTLPGAQVFGESWQEFVGDRVFS 175
           +P +  ATTL  A+VF ES  EF+ DRV S
Sbjct: 231 LPRVMCATTLHRAEVFVESVMEFM-DRVIS 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,772,236
Number of Sequences: 37544
Number of extensions: 239669
Number of successful extensions: 633
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)