Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B14
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    31   1.4  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    29   3.1  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    29   3.1  
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ...    29   5.5  
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10...    28   7.3  
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10...    28   7.3  

>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 233 LVHRFLASLGKNLSVIAYFLFDFVIDTCGLSL 138
           L++ FL +LGK L+ +  F    V+D CG+ +
Sbjct: 340 LIYDFLMTLGKRLTKVDAFTITTVLDCCGMKI 371


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40
            repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 357  HRCQLNTSERDKIECXQPWLVEMNAXPPTXAIYA 458
            H  QL   E  K+EC + W V  +A P T A ++
Sbjct: 977  HETQLAIYETTKLECMKQWPVRESAAPITHATFS 1010


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40
            repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 357  HRCQLNTSERDKIECXQPWLVEMNAXPPTXAIYA 458
            H  QL   E  K+EC + W V  +A P T A ++
Sbjct: 977  HETQLAIYETTKLECMKQWPVRESAAPITHATFS 1010


>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
           subunit (ClpC) identical to AtClpC GI:5360574 from
           [Arabidopsis thaliana]; contains Pfam profiles  PF02861:
            Clp amino terminal domain and PF02151:  UvrB/uvrC motif
          Length = 952

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +1

Query: 103 WQTHHGV*FSKYNDKPQVSMTKSKRKYAITDKFLPRLAKNLCTRKGSRRANTGNRLEHAV 282
           ++ HH +   +Y D+  V+  +   +Y I+D+FLP  A +L    GSR      RL HA 
Sbjct: 473 YEIHHKL---RYTDEALVAAAQLSHQY-ISDRFLPDKAIDLIDEAGSR-----VRLRHAQ 523

Query: 283 L 285
           L
Sbjct: 524 L 524


>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
            WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 357  HRCQLNTSERDKIECXQPWLVEMNAXPPTXAIYA 458
            H  QL   E  K+EC + W V  +  P T A ++
Sbjct: 988  HETQLAIYETTKLECMKQWAVRESLAPITHATFS 1021


>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
            WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 357  HRCQLNTSERDKIECXQPWLVEMNAXPPTXAIYA 458
            H  QL   E  K+EC + W V  +  P T A ++
Sbjct: 988  HETQLAIYETTKLECMKQWAVRESLAPITHATFS 1021


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,312,220
Number of Sequences: 28952
Number of extensions: 171279
Number of successful extensions: 387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)