Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B12
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    29   0.86 
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    29   0.86 
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    28   2.0  
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch...    27   4.6  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    27   4.6  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   4.6  
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   4.6  

>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +3

Query: 387 IYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKLNGSDLFYAVTNDNKAYKVTENGNKY 566
           ++ + +DGI++      +F++   F+  + +L +  G D     T  N     T  G   
Sbjct: 379 LFPSGSDGIHLVVDEKSNFREEN-FQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVK 437

Query: 567 VLDDKLKAVKQVMFDNFN-VLHYVTLDXEVFKVXETMEXIDFN 692
              D  K VK +M  N+N V+ +     E   +   M  +D N
Sbjct: 438 GPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMN 480


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +3

Query: 441  FKKYGTFKADVISLTKLNGSDLFYAVTNDNKAYKVTENGNK--YVLDDKLKAVKQVMFDN 614
            F  Y  F  D + +   N   +F+ +    ++Y V E+GN   YVL D  + + QV   N
Sbjct: 1001 FIAYIRFYVDTV-VNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLSDMAQKILQVKSQN 1059

Query: 615  F 617
            F
Sbjct: 1060 F 1060


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 255 IYTIHADINDNRIEKGVYEVDLNLN 329
           +YT+ A IND  + K + E D NLN
Sbjct: 117 MYTVSAKINDVEVVKVLLEPDFNLN 141


>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 6/134 (4%)
 Frame = +3

Query: 177 SVELYSTEDQVVGAFVISNAEKSEGKIYTIHADINDNRIEKGVYEVDLNLNTTVKILDK- 353
           S E++    +VV      NAE +          I +N I KGVY+         KI+ + 
Sbjct: 61  SKEIWDVLHKVVTLLYEGNAEAATEMALAADLTIPENDISKGVYDSKGTFYEIPKIVARI 120

Query: 354 -----GRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKLNGSDLFYAV 518
                 R    DD+    ++SND     +  D + K   + K D    + L    + Y  
Sbjct: 121 PRAFAERKDSLDDEDDNMISSNDPTKSPEEHDTTTKSIASLK-DAELDSSLETVLIRY-- 177

Query: 519 TNDNKAYKVTENGN 560
           + D+K Y +  N N
Sbjct: 178 SKDDKDYSIQINPN 191


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = -2

Query: 668 LXHFKYFXIQSDI----VQYIEVIKHNL--FDGFQFIIQNVFVTIFSDFVSFIVVCYG 513
           L HF  F I S +      Y + I H+   F   + I +  FVT+  DFV    + +G
Sbjct: 417 LFHFLLFDIGSGLSGSDYTYEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFG 474


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 319 KSTSYTPFSIRLSLMSACIVYILPSLFSALDITKAPT 209
           ++T     S +LS  S  I  + PSL S   +TK+P+
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPS 339


>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 423 YIHISRHC*LRISCCHHHNINPFLC 349
           +IH S HC      C +H INP +C
Sbjct: 18  HIHFSHHC------CENHFINPLVC 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,546
Number of Sequences: 5004
Number of extensions: 54738
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)