Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B12
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    29   3.7  
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47...    29   4.9  
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     29   6.4  

>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 531 KAYKVTENGNKYVLDDKLKAVKQVMFDNFN-VLHYVTLDXEVFKVXETME 677
           K YK+       +LD   KA  ++MFDN   V H   L  + F+V E M+
Sbjct: 215 KGYKLDIFAYNMLLDALAKAGMKIMFDNREWVFHMYMLVDQAFQVFEDMK 264


>11_01_0062 -
           476027-476044,476791-477195,477287-477574,477653-477830,
           478005-478133,478531-478729,478832-478970,479130-479195,
           480459-480580,480672-480742,480819-480903,481335-481453,
           481577-481687,481945-482117,482375-482446,482768-482862,
           483361-483450,483550-483646
          Length = 818

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 222 VISNAEKSEGKIYTIHA--DINDNRIEKGVYEVDLNLNTTVKILDKGRDLCYDDD 380
           +IS A+  +  +Y I+   +++D+   +G       L      +D G D+CYDDD
Sbjct: 245 IISLAQSEDSDVYDIYTVKEVDDDTTMEGTSSAPYPLLQ----VDNGDDVCYDDD 295


>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +3

Query: 441 FKKYGTFKADVISLTKLNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQ 599
           FK+Y    +D+ISL K+      Y   N +K  ++ E   K + D++L+  K+
Sbjct: 687 FKRYPKGFSDLISLKKIESKGFLY---NKDKDKQLLEWSTKGITDEQLQMTKE 736


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,904,718
Number of Sequences: 37544
Number of extensions: 310918
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)