Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_B12
(873 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 32 0.70
SB_6780| Best HMM Match : DM4_12 (HMM E-Value=5.3) 31 0.93
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 30 2.8
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23) 28 8.7
SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5) 28 8.7
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 28 8.7
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 31.9 bits (69), Expect = 0.70
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
Frame = +3
Query: 321 NLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD--KSFKKYGTFKADVISLTKLN 494
N N K + Y++++ +ND Y Y + K +K + + K
Sbjct: 746 NNNNKCKDTNNDNKYKYNNNNECKDTNNDNKYKYNNNNECKDTNNGNKYKYNNNNECKDT 805
Query: 495 GSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDXEV 653
+D Y N+NK K T N NKY ++K K V+H + ++
Sbjct: 806 NNDNKYKYNNNNKC-KDTNNDNKYKHNNKYKVKNSKKMMGAGVVHPANITKDI 857
>SB_6780| Best HMM Match : DM4_12 (HMM E-Value=5.3)
Length = 160
Score = 31.5 bits (68), Expect = 0.93
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +3
Query: 480 LTKLNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDXEVFK 659
LTK+ S+ F + K Y + V +D ++ K+ +F + V L E F
Sbjct: 26 LTKVGHSNCFSLLVTSRKVYGAPGEVRQAVFEDVVRVCKEAELFSFEQVKAVHLHPEAFS 85
Query: 660 VXETMEXIDFNLK 698
V + F +K
Sbjct: 86 VENDLMTATFKIK 98
>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1215
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +3
Query: 453 GTFKADVISLTKLNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHY 632
G K +++L K++G ++ +TNDN + + L D A+ ++ +N
Sbjct: 572 GKLKDVLVTLMKVSGEEIVKVLTNDNNDDDGDDGNDSDFLTDTFDALFAILNENARKYDK 631
Query: 633 VTLDXEVFKV 662
+ D VF +
Sbjct: 632 LVFDALVFTI 641
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 29.9 bits (64), Expect = 2.8
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -2
Query: 668 LXHFKYFXIQSDIVQYIEVIKHNLFDGFQFIIQNVFVTIFSDFVSFIVVCYGVKQIASVQ 489
L H + + S I+ +I V + F + +F+T+FS + FI V + V ++
Sbjct: 1103 LRHHPFITVFSVIILFITVFSVIILFITVFSVIILFITVFSVIILFITV-FSV----TIL 1157
Query: 488 FC*AYNVSFESTIFFKAFISGFIYIYPVIASYVYRAVIIIT*IP 357
F ++V+ F I FI ++ VI ++ III +P
Sbjct: 1158 FITVFSVTILFITVFSVIIL-FITVFSVIILFITVFSIIILLLP 1200
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +3
Query: 258 YTIH----ADINDNRIEKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYK 425
YT+H A I I K ++ KI G L Y ST Y+ S G++
Sbjct: 3909 YTLHFNRTATITSTFITKAFTSEYNTIDLMFKIERHGVILSYSKQSTFYLTSIGGVFTLH 3968
Query: 426 TGDKSFK 446
GD F+
Sbjct: 3969 FGDNVFR 3975
>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 28.7 bits (61), Expect = 6.6
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Frame = +3
Query: 261 TIHADINDNRIEKGVYEVDLNLN------TTVKILDKGRDLCYDDDSTIYVASNDGIYV- 419
T + D + R+EKG +V ++ T + +L+ G + + + S I V
Sbjct: 292 TNYTDTSSLRLEKGEAQVKKGVSIAGLGETELTLLEDGENAESETKESKISRSPISISVP 351
Query: 420 YKTGDKSFKKYGTFKADVISLTKLNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQ 599
K GD+ K Y +V+ N S+ Y+V N +K + E GN ++ ++ +
Sbjct: 352 VKVGDEKTKGY---VYNVLKKEISNNSESDYSVINRSKTIPLLEKGNLHITKFPKRSWRA 408
Query: 600 VM 605
+M
Sbjct: 409 IM 410
>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
Length = 553
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 276 INDNRIEKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIY 416
INDN + +Y+ D ++N ++ + D+D++IY N IY
Sbjct: 298 INDN--DNSIYDNDNSINDNDNSINDNDNSINDNDNSIYDNDNSSIY 342
>SB_23808| Best HMM Match : zf-AN1 (HMM E-Value=5.5)
Length = 165
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 256 ILPSLFSALDITKAPTT*SSVEYSSTLRCLKTEPLSTLEA 137
ILPS A+ +TKA T +E RC++ E + EA
Sbjct: 122 ILPSSVDAVRLTKASTKLRDIELKDIERCIEVEDTAFGEA 161
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 372 DDDSTIYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKLNGSDLFYAVTND-NKAYKVT 548
+DD I +DGI V + D G +K V S + + + KA K+
Sbjct: 331 EDDRVIISEQDDGIVVLRIKDVGAHDSGVYKCQVSSDVGTSTKSFDVTIEGERRKAKKLI 390
Query: 549 ENGNKYVLDDKLKAVKQ 599
E L+ ++K VK+
Sbjct: 391 EVDETEHLEKRIKHVKE 407
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,208,969
Number of Sequences: 59808
Number of extensions: 385274
Number of successful extensions: 1079
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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