Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B12
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           30   0.032
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   6.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   8.5  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 369 YDDDSTIYVASND-GIYVYKTGDKSFKKYGTFKADVISLTKLNGSDLFYAVTNDNKAY 539
           ++ D  ++V SN   +Y+Y + D S   Y  FKA+V    K    D  Y V +    Y
Sbjct: 491 HEYDQNVWVLSNKLAMYLYGSIDSSKINYRIFKANVKEAVKDTXCDPNYVVPDSEHGY 548


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 552 NGNKYVLDDKLKAVKQVMFDNFNVL 626
           NGN  V D+ +++  + M   FNV+
Sbjct: 49  NGNVNVEDENVQSYVECMMKKFNVV 73


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 108 LIFVVGLSVAASKVLNGSVFRQRSVELYS 194
           ++FVVGL   A +++    ++Q    LYS
Sbjct: 27  MVFVVGLERVAEELMGRRRWKQYQDTLYS 55


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 168 RQRSVELYSTEDQVVGAFVISNAEKSEGKI 257
           RQR+ +   TE++VV A  I+   +SE  +
Sbjct: 56  RQRANDAGLTEEEVVLAKTIAECPESENTV 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,099
Number of Sequences: 438
Number of extensions: 3354
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)