Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_B12
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:209756...    31   1.3  
At5g59260.1 68418.m07426 lectin protein kinase, putative similar...    30   1.8  
At5g23660.1 68418.m02774 nodulin MtN3 family protein similar to ...    30   1.8  
At3g48740.1 68416.m05322 nodulin MtN3 family protein similar to ...    29   4.1  
At1g53430.1 68414.m06056 leucine-rich repeat family protein / pr...    29   4.1  
At1g44875.1 68414.m05141 hypothetical protein                          29   5.4  
At3g24535.1 68416.m03081 expressed protein ; expression supporte...    28   7.1  
At5g06740.1 68418.m00762 lectin protein kinase family protein co...    28   9.4  
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    28   9.4  

>At1g74700.1 68414.m08652 RNase Z identical to RNase Z (GI:20975609)
           [Arabidopsis thaliana]
          Length = 280

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
 Frame = +3

Query: 222 VISNAEKSEGKIYTIHADINDNRIEKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVAS 401
           V ++ +++   ++ +H  ++ + ++  +  +D+     ++     +DL      T +V  
Sbjct: 82  VPASIKETVESLFEVHRKLDSSELKHNLVGLDIGEEFIIR-----KDLKVKAFKTFHVIQ 136

Query: 402 NDGIYVYKTGDKSFKKYGTFKADVISLTKLNGSDLFYAVTNDNKAYKVTENGNKYVLD-- 575
           + G  VY T  K  K+Y     + I   K++G ++  ++     A+   +  + +V+D  
Sbjct: 137 SQGYVVYSTKYKLKKEYIGLSGNEIKNLKVSGVEITDSIITPEVAF-TGDTTSDFVVDET 195

Query: 576 --DKLKAVKQVMFDNF 617
             D LKA   VM   F
Sbjct: 196 NADALKAKVLVMESTF 211


>At5g59260.1 68418.m07426 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 674

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 279 NDNRIEKGVYEVDLNLNTTVKILDK-GRDLCYDDDSTIYVASNDGIY 416
           NDN+    ++ V+L+ N   +  DK G D+  D +S + V S D  Y
Sbjct: 131 NDNKTATHIFAVELDTNQNSESFDKGGNDVGIDINSIVSVESADASY 177


>At5g23660.1 68418.m02774 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 285

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 346 NILTVVFRFKSTSYTPFSIRLSLMSACIVYILPSL 242
           +I+  V + KS  Y PFS+ L+L  + ++++L  L
Sbjct: 152 SIIRTVIKTKSVEYMPFSLSLTLTISAVIWLLYGL 186


>At3g48740.1 68416.m05322 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 289

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 346 NILTVVFRFKSTSYTPFSIRLSLMSACIVYILPSL 242
           +I+  V + +S  Y PFS+ L+L  + ++++L  L
Sbjct: 152 SIIRTVIKTRSVEYMPFSLSLTLTISAVIWLLYGL 186


>At1g53430.1 68414.m06056 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1030

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 24/78 (30%), Positives = 35/78 (44%)
 Frame = +3

Query: 246 EGKIYTIHADINDNRIEKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYK 425
           E ++  +H DI    +      +DL+LN   KI D G     DD++T       G   Y 
Sbjct: 778 ESRLKIVHRDIKATNVL-----LDLSLNA--KISDFGLAKLNDDENTHISTRIAGTIGYM 830

Query: 426 TGDKSFKKYGTFKADVIS 479
             + + + Y T KADV S
Sbjct: 831 APEYAMRGYLTDKADVYS 848


>At1g44875.1 68414.m05141 hypothetical protein
          Length = 133

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 346 NILTVVFRFKSTSYTPFSIRLSLMSACIVYILPSLFSAL-DITKA-PTT*SSVEYSSTLR 173
           NIL + F+F  T+   F I   L++  + Y+      AL ++ KA P    +V    TLR
Sbjct: 6   NILHLKFQFVETTIQEFHIPPPLLAKIVNYLAEDGVDALKNLIKAGPVFKEAVYSEKTLR 65

Query: 172 CLKTE 158
           C++ +
Sbjct: 66  CVRLD 70


>At3g24535.1 68416.m03081 expressed protein ; expression supported
           by MPSS
          Length = 188

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = -2

Query: 638 SDIVQYIEVIKHNLFDGFQFIIQNVFVTIFSDFVS 534
           SD+++++       +  +  +++N F+ ++SDF S
Sbjct: 125 SDVIEFLHCYSRLRYTAYLDVVENFFMEVYSDFFS 159


>At5g06740.1 68418.m00762 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and Serine/Threonine protein kinases
           active-site signature, PROSITE:PS00108
          Length = 652

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 489 LNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDXEVFK 659
           L+G+ +   V N N   + + +G    +D  L     V +D  N+  YV+ + +VF+
Sbjct: 158 LDGNHVALNVNNINSVVQESLSGRGIKIDSGLDLTAHVRYDGKNLSVYVSRNLDVFE 214


>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +3

Query: 504 LFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDXEVFKVXETMEXI 683
           L Y   ND ++        KY LD+     KQ     F +L  + L+   F +   +   
Sbjct: 577 LNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQLKGFEMLKAIHLEPNPFDIERDLITP 636

Query: 684 DFNLK 698
            F LK
Sbjct: 637 TFKLK 641


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,954,839
Number of Sequences: 28952
Number of extensions: 268700
Number of successful extensions: 713
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)